RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 MTTPP55157 894 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 HSD17B7P56937 341 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 ID2Q02363 134 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 TGM3Q08188 693 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 STX4Q12846 297 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 FRG1Q14331 258 aaKnown RBP13.5□□□□□ -0.25
SDC1-204ENST00000429035 CDH24Q86UP0 819 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 GPSM1Q86YR5 675 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 ZNF595Q8IYB9 648 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 TCAIMQ8N3R3 496 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 TMEM132CQ8N3T6 1108 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 PSD4Q8NDX1 1056 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 OR2L5Q8NG80 312 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 ANKRD7Q92527 254 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 SERINC2Q96SA4 455 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 OR8D2Q9GZM6 311 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 CNOT10Q9H9A5 744 aaKnown RBP13.5□□□□□ -0.25
SDC1-204ENST00000429035 CD274Q9NZQ7 290 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 YARS2Q9Y2Z4 477 aaKnown RBP13.5□□□□□ -0.25
SDC1-204ENST00000429035 SNX24Q9Y343 169 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 CLCA3PQ9Y6N3 262 aa13.5□□□□□ -0.25
SDC1-204ENST00000429035 POLQO75417 2590 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 A0A0G2JMM0 328 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 A0A1W2PPB8 328 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 A0A1W2PRS3 328 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 PINLYPA6NC86 204 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 NKX2-6A6NCS4 301 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 KIR3DP1A8MWS1 328 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 CCNT2O60583 730 aaKnown RBP13.49□□□□□ -0.25
SDC1-204ENST00000429035 OR6B1O95007 311 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 PCNAP12004 261 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 GSTM2P28161 218 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 SOX3P41225 446 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 LIM2P55344 173 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 PPIAP62937 165 aaKnown RBP13.49□□□□□ -0.25
SDC1-204ENST00000429035 MRPS25P82663 173 aaKnown RBP13.49□□□□□ -0.25
SDC1-204ENST00000429035 RCN2Q14257 317 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 ELAVL1Q15717 326 aaKnown RBP13.49□□□□□ -0.25
SDC1-204ENST00000429035 ARHGAP11AQ6P4F7 1023 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 HSDL2Q6YN16 418 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 RPRMLQ8N4K4 120 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 MARVELD2Q8N4S9 558 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 ZFP62Q8NB50 900 aaPredicted RBP13.49□□□□□ -0.25
SDC1-204ENST00000429035 OR5M3Q8NGP4 307 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 CDKL2Q92772 493 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 TSPAN17Q96FV3 270 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 QRFPRQ96P65 431 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 CAPS2Q9BXY5 557 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 DERL2Q9GZP9 239 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 DPH5Q9H2P9 285 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 TP63Q9H3D4 680 aaPredicted RBP13.49□□□□□ -0.25
SDC1-204ENST00000429035 POPDC3Q9HBV1 291 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 SMYD2Q9NRG4 433 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 DEPPQ9NTK1 212 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 GPRC5BQ9NZH0 403 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 RNF112Q9ULX5 631 aa13.49□□□□□ -0.25
SDC1-204ENST00000429035 MTO1Q9Y2Z2 717 aaKnown RBP13.49□□□□□ -0.25
SDC1-204ENST00000429035 ANKRD17O75179 2603 aaKnown RBP13.48□□□□□ -0.25
SDC1-204ENST00000429035 OTOGQ6ZRI0 2925 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 NPIPA2E9PIF3 369 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 NPIPA3F8WFD2 350 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 FANCGO15287 622 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 TAPBPO15533 448 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 LDB3O75112 727 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 STK16O75716 305 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 CCDC166P0CW27 439 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 PAFAH1B1P43034 410 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 MSH2P43246 934 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 RPL21P46778 160 aaKnown RBP13.48□□□□□ -0.25
SDC1-204ENST00000429035 NR0B1P51843 470 aaKnown RBP13.48□□□□□ -0.25
SDC1-204ENST00000429035 GNG11P61952 73 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 POU4F1Q01851 419 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 DOC2AQ14183 400 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 PDK4Q16654 411 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 TMEM211Q6ICI0 200 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 ABHD17CQ6PCB6 329 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 PAOXQ6QHF9 649 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 VN1R5Q7Z5H4 357 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 GPALPP1Q8IXQ4 340 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 ARMC10Q8N2F6 343 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 OR2M7Q8NG81 312 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 OR5M9Q8NGP3 310 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 C16orf52Q8NHV5 167 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 PYROXD1Q8WU10 500 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 ASB5Q8WWX0 329 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 RND1Q92730 232 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 DAZLQ92904 295 aaKnown RBP13.48□□□□□ -0.25
SDC1-204ENST00000429035 PTCD3Q96EY7 689 aaKnown RBP13.48□□□□□ -0.25
SDC1-204ENST00000429035 C14orf79Q96F83 325 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 F2RL3Q96RI0 385 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 RASL10BQ96S79 203 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 KRT12Q99456 494 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 NAPGQ99747 312 aaPredicted RBP13.48□□□□□ -0.25
SDC1-204ENST00000429035 SPOCK3Q9BQ16 436 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 EFCAB11Q9BUY7 163 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 KCNF1Q9H3M0 494 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 SAYSD1Q9NPB0 183 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 MOCS1Q9NZB8 636 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 DAPP1Q9UN19 280 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 RNF6Q9Y252 685 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms