RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 CCDC89Q8N998 374 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GPR26Q8NDV2 337 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 OR4C6Q8NH72 309 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 LMX1AQ8TE12 382 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 HTRA1Q92743 480 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 MAGOHBQ96A72 148 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 NAPGQ99747 312 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TBL1YQ9BQ87 522 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TRIM31Q9BZY9 425 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 NLGN3Q9NZ94 848 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 NCKIPSDQ9NZQ3 722 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 IL17CQ9P0M4 197 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 IFT80Q9P2H3 777 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KLQ9UEF7 1012 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PYCARDQ9ULZ3 195 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SLC17A4Q9Y2C5 497 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PKP3Q9Y446 797 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 OR1A2Q9Y585 309 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PCDHGA1Q9Y5H4 931 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GVINP1Q7Z2Y8 2422 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PCDH15Q96QU1 1955 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 RALGAPA1Q6GYQ0 2036 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TRPM6Q9BX84 2022 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KIR2DS5A0A0G2JLQ3 304 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GOLGA6L10A0A0M3HER8 536 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 A0A0U1RQS6 177 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SPAARA0A1B0GVQ0 90 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CTAGE9A4FU28 777 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM202A6NGA9 273 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 USP27XA6NNY8 438 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GPR89AB7ZAQ6 455 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 MCIDASD6RGH6 385 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KIR2DS3K7RE56 304 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KCNJ13O60928 360 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SDC3O75056 442 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PIRTP0C851 137 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GPR89BP0CG08 455 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GIMD1P0DJR0 217 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CKMT2P17540 419 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PSMA3P25788 255 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 COILP38432 576 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SPAM1P38567 509 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 HADHAP40939 763 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PAFAH1B1P43034 410 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KCNJ1P48048 391 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 NPY2RP49146 381 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 LMAN1P49257 510 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 FNTAP49354 379 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SARNPP82979 210 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CDK16Q00536 496 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 IL9RQ01113 521 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CDH17Q12864 832 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ILKQ13418 452 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 C1orf61Q13536 156 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 THOC5Q13769 683 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ITGA9Q13797 1035 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 INPP5JQ15735 1006 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 C6orf10Q5SRN2 563 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 HENMT1Q5T8I9 393 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ASPHD1Q5U4P2 390 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ARMC3Q5W041 872 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ATG16L1Q676U5 607 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 NLRP9Q7RTR0 991 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GSTA5Q7RTV2 222 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GLT6D1Q7Z4J2 308 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TMEM200AQ86VY9 491 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CCDC25Q86WR0 208 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 HEATR4Q86WZ0 1026 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GKN2Q86XP6 184 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 KLBQ86Z14 1044 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 RBFAQ8N0V3 343 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PELI3Q8N2H9 469 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 FAM110DQ8TAY7 271 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 BLOC1S5Q8TDH9 187 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 C2CD4CQ8TF44 421 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GRK7Q8WTQ7 553 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 OR1E3Q8WZA6 343 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TSACCQ96A04 125 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 COX14Q96I36 57 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CNDP2Q96KP4 475 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 RUNDC3BQ96NL0 473 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CAMK1GQ96NX5 476 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 VPS35Q96QK1 796 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 RANBP9Q96S59 729 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 APOL2Q9BQE5 337 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 ZSCAN5AQ9BUG6 496 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SPATA16Q9BXB7 569 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GSDMCQ9BYG8 508 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 FGF22Q9HCT0 170 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 IL26Q9NPH9 171 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 EIF2B3Q9NR50 452 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SLC22A11Q9NSA0 550 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 VPS18Q9P253 973 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 APOBEC3BQ9UH17 382 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CD84Q9UIB8 345 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 MOSPD1Q9UJG1 213 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 APPL1Q9UKG1 709 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SAR1BQ9Y6B6 198 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 TNRC6BQ9UPQ9 1833 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 PI4KAP42356 2102 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms