RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 SLC13A2Q13183 592 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ZRSR2Q15696 482 aaKnown RBP13.88□□□□□ -0.19
LIMS4-201ENST00000413601 AP5B1Q2VPB7 878 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ACER2Q5QJU3 275 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 DEPDC1Q5TB30 811 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 CLNKQ7Z7G1 428 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 SCUBE1Q8IWY4 988 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 KIF2BQ8N4N8 673 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ACOT4Q8N9L9 421 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 OR1N1Q8NGS0 311 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ADAMTS18Q8TE60 1221 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 REPS1Q96D71 796 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 MTFMTQ96DP5 389 aaKnown RBP13.88□□□□□ -0.19
LIMS4-201ENST00000413601 NPAS2Q99743 824 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 MAPKAP1Q9BPZ7 522 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 CCDC77Q9BR77 488 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ROGDIQ9GZN7 287 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ANKZF1Q9H8Y5 726 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ZBTB26Q9HCK0 441 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 SEMA4BQ9NPR2 832 aaPredicted RBP13.88□□□□□ -0.19
LIMS4-201ENST00000413601 DMRT3Q9NQL9 472 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 PNO1Q9NRX1 252 aaKnown RBP13.88□□□□□ -0.19
LIMS4-201ENST00000413601 KCMF1Q9P0J7 381 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 TMEM216Q9P0N5 145 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 TEKT2Q9UIF3 430 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 MRPS33Q9Y291 106 aaKnown RBP13.88□□□□□ -0.19
LIMS4-201ENST00000413601 TSC22D4Q9Y3Q8 395 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 CLDN16Q9Y5I7 305 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 ESPL1Q14674 2120 aa13.88□□□□□ -0.19
LIMS4-201ENST00000413601 SAGE2PA6NJ88 616 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 A8MT66 165 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 FOXO6A8MYZ6 492 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 TCP11X1B4DZS4 312 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 MAN1A2O60476 641 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 PYGBP11216 843 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 HIST1H1TP22492 207 aaPredicted RBP13.87□□□□□ -0.19
LIMS4-201ENST00000413601 PPP2R1BP30154 601 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 TSFMP43897 325 aaKnown RBP13.87□□□□□ -0.19
LIMS4-201ENST00000413601 ST13P50502 369 aaKnown RBP13.87□□□□□ -0.19
LIMS4-201ENST00000413601 NEK2P51955 445 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 RAP1GDS1P52306 607 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 PHEXP78562 749 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 OR4C11Q6IEV9 310 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 CRLF3Q8IUI8 442 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 ZNF595Q8IYB9 648 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 BEST3Q8N1M1 668 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 NFAM1Q8NET5 270 aaPredicted RBP13.87□□□□□ -0.19
LIMS4-201ENST00000413601 ELP5Q8TE02 316 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 MZB1Q8WU39 189 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 RGMAQ96B86 450 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 ZNF354BQ96LW1 612 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 NTMT1Q9BV86 223 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 RNF32Q9H0A6 362 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.87□□□□□ -0.19
LIMS4-201ENST00000413601 LYRM4Q9HD34 91 aa13.87□□□□□ -0.19
LIMS4-201ENST00000413601 MYOCOSA0A1B0GUC4 107 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 A0A1W2PPM1 405 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 PPP6CO00743 305 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 PLPP1O14494 284 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 MYO1DO94832 1006 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 RPS17P08708 135 aaKnown RBP13.86□□□□□ -0.19
LIMS4-201ENST00000413601 TSPAN8P19075 237 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 PTX3P26022 381 aaPredicted RBP13.86□□□□□ -0.19
LIMS4-201ENST00000413601 SLCO1A2P46721 670 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 CDH13P55290 713 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 TAS2R50P59544 299 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 TRAF3Q13114 568 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 SLAMF1Q13291 335 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 MRPL49Q13405 166 aaKnown RBP13.86□□□□□ -0.19
LIMS4-201ENST00000413601 RCN2Q14257 317 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 NR6A1Q15406 480 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 WDR20Q8TBZ3 569 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 ACMSDQ8TDX5 336 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 GRHL3Q8TE85 626 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 ZNF483Q8TF39 744 aaPredicted RBP13.86□□□□□ -0.19
LIMS4-201ENST00000413601 CENPKQ9BS16 269 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 SLC29A3Q9BZD2 475 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 FBXW2Q9UKT8 454 aa13.86□□□□□ -0.19
LIMS4-201ENST00000413601 TRAV17A0A0B4J275 112 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 A0A1B0GTL3 188 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 OR5H15A6NDH6 313 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 SMIM23A6NLE4 172 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 DLX3O60479 287 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 CTNSO60931 367 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 LDB3O75112 727 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 SCELO95171 688 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 ETHE1O95571 254 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 TAC1P20366 129 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 CPN2P22792 545 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 SRSF1Q07955 248 aaKnown RBP eCLIP13.85□□□□□ -0.19
LIMS4-201ENST00000413601 MEP1AQ16819 746 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 TTC19Q6DKK2 380 aaPredicted RBP13.85□□□□□ -0.19
LIMS4-201ENST00000413601 MILR1Q7Z6M3 343 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 LCA5Q86VQ0 697 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 SLC5A8Q8N695 610 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 B3GNT7Q8NFL0 401 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 OR4F6Q8NGB9 312 aa13.85□□□□□ -0.19
LIMS4-201ENST00000413601 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.85□□□□□ -0.19
LIMS4-201ENST00000413601 BARD1Q99728 777 aaKnown RBP13.85□□□□□ -0.19
LIMS4-201ENST00000413601 C1QTNF3Q9BXJ4 246 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms