RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 DNAJB6O75190 326 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ERN1O75460 977 aaKnown RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 C6orf47O95873 294 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 CD1CP29017 333 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 GPR3P46089 330 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 RELAQ04206 551 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 SUZ12Q15022 739 aaKnown RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ZC3H12BQ5HYM0 836 aaKnown RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 PERM1Q5SV97 790 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ZC3H14Q6PJT7 736 aaKnown RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 CYP2R1Q6VVX0 501 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 MSANTD1Q6ZTZ1 278 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 SPRED1Q7Z699 444 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ARPINQ7Z6K5 226 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 PNPT1Q8TCS8 783 aaKnown RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 N4BP2L2Q92802 583 aaPredicted RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ASB9Q96DX5 294 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 MAPKAP1Q9BPZ7 522 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ECSITQ9BQ95 431 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 NUDT22Q9BRQ3 303 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 C11orf16Q9NQ32 467 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 SUCOQ9UBS9 1254 aaKnown RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ATXN7L1Q9ULK2 861 aaPredicted RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ASB4Q9Y574 426 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 PCDH15Q96QU1 1955 aa11.81□□□□□ -0.52
CHMP3-204ENST00000409727 ARID1BQ8NFD5 2236 aaPredicted RBP11.81□□□□□ -0.52
CHMP3-204ENST00000409727 LY6G6EA0A0G2JKS1 128 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 RNASET2O00584 256 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ZSCAN9O15535 394 aaPredicted RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ALOX12P18054 663 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PTPN6P29350 595 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ARL4DP49703 201 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 GSK3BP49841 420 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 HBA1P69905 142 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 GPLD1P80108 840 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 RIPK1Q13546 671 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 TRIM25Q14258 630 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 RUNDC3AQ59EK9 446 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 LRIF1Q5T3J3 769 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 TMEM214Q6NUQ4 689 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PLXDC1Q8IUK5 500 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 SHISA5Q8N114 240 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ZCCHC7Q8N3Z6 543 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 DNAJC22Q8N4W6 341 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 DTWD1Q8N5C7 304 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 OR8J3Q8NGG0 315 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 OR10A6Q8NH74 314 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PYDC1Q8WXC3 89 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 MTERF3Q96E29 417 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 CCDC115Q96NT0 180 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 FAIM2Q9BWQ8 316 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 NLNQ9BYT8 704 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PDE7BQ9NP56 450 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 EPHA6Q9UF33 1036 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 UTS2RQ9UKP6 389 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 RAB23Q9ULC3 237 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 NAALAD2Q9Y3Q0 740 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 U3KQA8 63 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 KMT2EQ8IZD2 1858 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 TRBV5-3A0A0A0MS03 114 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 A0A1W2PRB8 838 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ACOT8O14734 319 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 KHNYNO15037 678 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PGRMC2O15173 223 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 B3GALT2O43825 422 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ERAL1O75616 437 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PSMG1O95456 288 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ZBTB11O95625 1053 aaPredicted RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 AIFM1O95831 613 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 NCK1P16333 377 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 TSFMP43897 325 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 TRPC1P48995 793 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 CASP9P55211 416 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 TRA2BP62995 288 aaKnown RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 SLC14A1Q13336 389 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 GAB1Q13480 694 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 RCN1Q15293 331 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 SNCBQ16143 134 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 ANGPTL8Q6UXH0 198 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PDSS2Q86YH6 399 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 FAM47BQ8NA70 645 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 OR5T3Q8NGG3 340 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 OR5AK3PQ8NH89 298 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 CPPED1Q9BRF8 314 aaPredicted RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 RAB33BQ9H082 229 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 NKX1-2Q9UD57 310 aaPredicted RBP11.8□□□□□ -0.52
CHMP3-204ENST00000409727 BTNL2Q9UIR0 455 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 PCDHGB4Q9UN71 923 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 SNX8Q9Y5X2 465 aa11.8□□□□□ -0.52
CHMP3-204ENST00000409727 SGK494L7N484 410 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 CLIC1O00299 241 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 PDPK1O15530 556 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 GUCY1B2O75343 617 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 BCAS2O75934 225 aaPredicted RBP11.79□□□□□ -0.52
CHMP3-204ENST00000409727 EPN2O95208 641 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 NTRK1P04629 796 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 RPLP0P05388 317 aaKnown RBP11.79□□□□□ -0.52
CHMP3-204ENST00000409727 C8orf89P0DMQ9 161 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 SMIM10L1P0DMW3 83 aa11.79□□□□□ -0.52
CHMP3-204ENST00000409727 HSD17B1P14061 328 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms