RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 RAB43Q86YS6 212 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 OR2A12Q8NGT7 310 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 RFKQ969G6 155 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 CIDECQ96AQ7 238 aaPredicted RBP17.77■□□□□ 0.43
USP48-204ENST00000400301 LMLNQ96KR4 655 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 POLE4Q9NR33 117 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 GPR83Q9NYM4 423 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 ITGB1BP2Q9UKP3 347 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 DOCK3Q8IZD9 2030 aa17.77■□□□□ 0.43
USP48-204ENST00000400301 FAM86C2PA6NEL3 165 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 TAF4O00268 1085 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 IFNA16P05015 189 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 CSTF2P33240 577 aaKnown RBP eCLIP17.76■□□□□ 0.43
USP48-204ENST00000400301 RPL4P36578 427 aaKnown RBP17.76■□□□□ 0.43
USP48-204ENST00000400301 ADARB1P78563 741 aaKnown RBP17.76■□□□□ 0.43
USP48-204ENST00000400301 C6orf120Q7Z4R8 191 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 HMGN2P46Q86SG4 172 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 PEX5LQ8IYB4 626 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 SRMSQ9H3Y6 488 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 CCL26Q9Y258 94 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.76■□□□□ 0.43
USP48-204ENST00000400301 OR12D1P0DN82 309 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 ZNF8P17098 575 aaPredicted RBP17.76■□□□□ 0.43
USP48-204ENST00000400301 SCN1BQ07699 218 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 FCHO2Q0JRZ9 810 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 KEAP1Q14145 624 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 SMN1Q16637 294 aaKnown RBP17.76■□□□□ 0.43
USP48-204ENST00000400301 NCSTNQ92542 709 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 CAMK1GQ96NX5 476 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 NDEL1Q9GZM8 345 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 ZNF225Q9UK10 706 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 MGAT4BQ9UQ53 548 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 MAN2B2Q9Y2E5 1009 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 FEZF1A0PJY2 475 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 RYKP34925 604 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 ACTR1BP42025 376 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 RORCP51449 518 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 ACTR1AP61163 376 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 GPM6BQ13491 265 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 MAD2L1BPQ15013 274 aaPredicted RBP17.76■□□□□ 0.43
USP48-204ENST00000400301 UAP1L1Q3KQV9 507 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 GGTA1PQ4G0N0 100 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 ZNF311Q5JNZ3 666 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 CBLL1Q75N03 491 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 UBE2J2Q8N2K1 259 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 RASGEF1AQ8N9B8 481 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 L3MBTL4Q8NA19 623 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 OR9Q2Q8NGE9 314 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 SETD7Q8WTS6 366 aaKnown RBP17.76■□□□□ 0.43
USP48-204ENST00000400301 ZNF480Q8WV37 535 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 FAIMQ9NVQ4 179 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 C5AR2Q9P296 337 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 NDOR1Q9UHB4 597 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 ENPP5Q9UJA9 477 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 H3BNC9 293 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 VEGFDO43915 354 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 GPR37L1O60883 481 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 VLDLRP98155 873 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 C5orf22Q49AR2 442 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 SMARCD3Q6STE5 483 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 TMEM165Q9HC07 324 aa17.76■□□□□ 0.43
USP48-204ENST00000400301 CKMT1AP12532 417 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 PIGAP37287 484 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 WDR5P61964 334 aaKnown RBP17.75■□□□□ 0.43
USP48-204ENST00000400301 MGLLQ99685 303 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 SYNDIG1Q9H7V2 258 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 LRRC72A6NJI9 287 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 RHCEP18577 417 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 PCGF2P35227 344 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 CRISP1P54107 249 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 CEP78Q5JTW2 689 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 ATAT1Q5SQI0 421 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 PARGQ86W56 976 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 STX4Q12846 297 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 KIAA1161Q6NSJ0 714 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 PARS2Q7L3T8 475 aaKnown RBP17.75■□□□□ 0.43
USP48-204ENST00000400301 RAD9AQ99638 391 aa17.75■□□□□ 0.43
USP48-204ENST00000400301 NUP214P35658 2090 aaPredicted RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 FAM240BA0A1B0GVZ2 78 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 CH25HO95992 272 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 PIM1P11309 404 aaPredicted RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 UGT8Q16880 541 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 CCDC116Q8IYX3 515 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 PAPD5Q8NDF8 572 aaKnown RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 OR13F1Q8NGS4 319 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 WDR48Q8TAF3 677 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 UFD1Q92890 307 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 ZNF300Q96RE9 604 aaPredicted RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 FBXL12Q9NXK8 326 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 ENPP4Q9Y6X5 453 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 FABP12A6NFH5 140 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 CHST10O43529 356 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 MYL9P24844 172 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 TOR1AIP1Q5JTV8 583 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 IQCHQ86VS3 1027 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 OR5AR1Q8NGP9 310 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 NDNFQ8TB73 568 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 TMCO6Q96DC7 493 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 LMAN2LQ9H0V9 348 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 IKZF5Q9H5V7 419 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms