RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF26P17031 533 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-205ENST00000392004 CLCN7P51798 805 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 GSTM4Q03013 218 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 RELAQ04206 551 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 CBLBQ13191 982 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 LAPTM5Q13571 262 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 FZD2Q14332 565 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 ZNF829Q3KNS6 432 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-205ENST00000392004 NXPE4Q6UWF7 544 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 LRRC70Q7Z2Q7 622 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 MCATQ8IVS2 390 aaKnown RBP9.85□□□□□ -0.83
COL6A3-205ENST00000392004 TRPV3Q8NET8 790 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 OR7G3Q8NG95 312 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 RAB8BQ92930 207 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 RNF145Q96MT1 663 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 ZFYVE21Q9BQ24 234 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 SOX17Q9H6I2 414 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-205ENST00000392004 MAT2BQ9NZL9 334 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 N6AMT1Q9Y5N5 214 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 HS3ST3A1Q9Y663 406 aa9.85□□□□□ -0.83
COL6A3-205ENST00000392004 ARHGAP33O14559 1287 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 FHP07954 510 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 IDO1P14902 403 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 PTX3P26022 381 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 CERS1P27544 350 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 IMPA1P29218 277 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 PPP1CAP62136 330 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 RPS26P62854 115 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 ILF2Q12905 390 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 SPANXN4Q5MJ08 99 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 WDR53Q7Z5U6 358 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 PCDHAC1Q9H158 963 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 TUBA8Q9NY65 449 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 ORC6Q9Y5N6 252 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 VCANP13611 3396 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 HS6ST1O60243 411 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 GDF9O60383 454 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 POLR2JP52435 117 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 RHDQ02161 417 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 EIF4EBP2Q13542 120 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 LASP1Q14847 261 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 ADNP2Q6IQ32 1131 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 RABEPKQ7Z6M1 372 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 DHFR2Q86XF0 187 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 FAM9CQ8IZT9 166 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 NRBF2Q96F24 287 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 PLEKHA8Q96JA3 519 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 ZBTB26Q9HCK0 441 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 SUCOQ9UBS9 1254 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 CDC14AQ9UNH5 594 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 TSC22D4Q9Y3Q8 395 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 U3KQV3 271 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 FAM208BQ5VWN6 2430 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 CDC14CA4D256 554 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 TIPRLO75663 272 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 KCNH1O95259 989 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 SLC7A1P30825 629 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 EIF2B2P49770 351 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 MC1RQ01726 317 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 TRIM16LQ309B1 348 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 C14orf28Q4W4Y0 310 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 SAMD4BQ5PRF9 694 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 DCP2Q8IU60 420 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 PLPP6Q8IY26 295 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 CPSF7Q8N684 471 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 CEP76Q8TAP6 659 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 EGLN2Q96KS0 407 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 GPATCH1Q9BRR8 931 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 TIMM29Q9BSF4 260 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 POLR1BQ9H9Y6 1135 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 RPS6KB2Q9UBS0 482 aa9.84□□□□□ -0.83
COL6A3-205ENST00000392004 RUVBL1Q9Y265 456 aaKnown RBP9.84□□□□□ -0.83
COL6A3-205ENST00000392004 A0A1W2PRB8 838 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PEX14O75381 377 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PIAS2O75928 621 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 CPNE6O95741 557 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 EML2O95834 649 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 IL3P08700 152 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 UGT2B7P16662 529 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 TYSND1Q2T9J0 566 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 DHRS4L2Q6PKH6 230 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 CARM1Q86X55 608 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 AGBL5Q8NDL9 886 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 DENND6BQ8NEG7 585 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 NACC2Q96BF6 587 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 SH3YL1Q96HL8 342 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 COPS7AQ9UBW8 275 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PTRH2Q9Y3E5 179 aaKnown RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ASB1Q9Y576 335 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 CLOCKO15516 846 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PRKNO60260 465 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 FOXD2O60548 495 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PRKRAO75569 313 aaKnown RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ZNF888P0CJ79 500 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ST6GAL1P15907 406 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 CKMT2P17540 419 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 ITGA3P26006 1051 aa9.83□□□□□ -0.84
COL6A3-205ENST00000392004 PPP1R8Q12972 351 aaKnown RBP9.83□□□□□ -0.84
COL6A3-205ENST00000392004 NR1D2Q14995 579 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms