RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 FBXO22Q8NEZ5 403 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 PIGXQ8TBF5 258 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 GON7Q9BXV9 100 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 CSNK1G1Q9HCP0 422 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 BRD7Q9NPI1 651 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 GJD2Q9UKL4 321 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 CNTRLQ7Z7A1 2325 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 I6L893 689 aaPredicted RBP13.7□□□□□ -0.22
RTF1-201ENST00000389629 SMAD9O15198 467 aaKnown RBP13.7□□□□□ -0.22
RTF1-201ENST00000389629 LAMP1P11279 417 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 GNA13Q14344 377 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 PTPRRQ15256 657 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 SF1Q15637 639 aaKnown RBP13.7□□□□□ -0.22
RTF1-201ENST00000389629 AAK1Q2M2I8 961 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 FAIM2Q9BWQ8 316 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 SLCO3A1Q9UIG8 710 aa13.7□□□□□ -0.22
RTF1-201ENST00000389629 A0A1B0GTL3 188 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 MAN2A2P49641 1150 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 ZNF140P52738 457 aaPredicted RBP13.69□□□□□ -0.22
RTF1-201ENST00000389629 CCL23P55773 120 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SLBPQ14493 270 aaKnown RBP eCLIP13.69□□□□□ -0.22
RTF1-201ENST00000389629 TBCEQ15813 527 aaPredicted RBP13.69□□□□□ -0.22
RTF1-201ENST00000389629 ARHGAP15Q53QZ3 475 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 OLFML2AQ68BL7 652 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 NADSYN1Q6IA69 706 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 GDPD1Q8N9F7 314 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SIMC1Q8NDZ2 872 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 DENND6BQ8NEG7 585 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 HMGCLL1Q8TB92 370 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SETD6Q8TBK2 473 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SCRN2Q96FV2 425 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 LRR1Q96L50 414 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 HOXD1Q9GZZ0 328 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SAV1Q9H4B6 383 aaPredicted RBP13.69□□□□□ -0.22
RTF1-201ENST00000389629 RANBP3Q9H6Z4 567 aaPredicted RBP13.69□□□□□ -0.22
RTF1-201ENST00000389629 PLSCR3Q9NRY6 295 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 TMEM30AQ9NV96 361 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 MED11Q9P086 117 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 TNFRSF10DQ9UBN6 386 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SRRDQ9UH36 339 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 DLGAP4Q9Y2H0 992 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 A0A1B0GVC2 190 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 A6NIN4 97 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 MUSKO15146 869 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 GGT2P36268 569 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 RGRP47804 291 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SMSP52788 366 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 AP1S2P56377 157 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 RPS13P62277 151 aaKnown RBP13.69□□□□□ -0.22
RTF1-201ENST00000389629 NKX3-2P78367 333 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 GPR19Q15760 415 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 CNIH2Q6PI25 160 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 IQCF1Q8N6M8 205 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 PIP5K1AQ99755 562 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 PCDHB11Q9Y5F2 797 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 MTMR11A4FU01 709 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 PITPNM1O00562 1244 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 JRKO75564 520 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 ALX3O95076 343 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SRPRAP08240 638 aaKnown RBP13.69□□□□□ -0.22
RTF1-201ENST00000389629 SLC10A3P09131 477 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 PEPDP12955 493 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 ENDOUP21128 410 aaKnown RBP13.69□□□□□ -0.22
RTF1-201ENST00000389629 OR3A3P47888 321 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 TAS2R50P59544 299 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 VLDLRP98155 873 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 IQCHQ86VS3 1027 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 PMEPA1Q969W9 287 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 CSF3RQ99062 836 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 LOC105369274A0A096LPK9 316 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 ADORA3P0DMS8 318 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 SSTR2P30874 369 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 EFR3AQ14156 821 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 NTRK2Q16620 822 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 OR4N4Q8N0Y3 316 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 DYNC2LI1Q8TCX1 351 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 MBOAT4Q96T53 435 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 TMEM45AQ9NWC5 275 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 OSER1Q9NX31 292 aa13.69□□□□□ -0.22
RTF1-201ENST00000389629 TCRBV5S2A0A599 114 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 AXIN1O15169 862 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 PQBP1O60828 265 aaKnown RBP13.68□□□□□ -0.22
RTF1-201ENST00000389629 ITGBL1O95965 494 aaPredicted RBP13.68□□□□□ -0.22
RTF1-201ENST00000389629 SPNP16150 400 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 ALAS2P22557 587 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 CXCR2P25025 360 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 DGKGP49619 791 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 FAM180BQ6P0A1 224 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 TMEM220Q6QAJ8 160 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 LACC1Q8IV20 430 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 NAGSQ8N159 534 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 SNX33Q8WV41 574 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 TIFAQ96CG3 184 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 NEDD4LQ96PU5 975 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 TTTY10Q9BZA0 68 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 A0A1W2PPK0 400 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 ENTPD6O75354 484 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 BDKRB1P46663 353 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 CAV3P56539 151 aa13.68□□□□□ -0.22
RTF1-201ENST00000389629 RPS26P62854 115 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms