RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 AGR2O95994 175 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 CCL5P13501 91 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 SLC6A6P31641 620 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 ST3GAL4Q11206 333 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 TMEM115Q12893 351 aaPredicted RBP13.21□□□□□ -0.29
COL4A1-201ENST00000375820 MAB21L1Q13394 359 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 EOGTQ5NDL2 527 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 OR4N5Q8IXE1 308 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 PEX13Q92968 403 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 SUSD3Q96L08 255 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 SYT17Q9BSW7 474 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 RPF2Q9H7B2 306 aaKnown RBP13.21□□□□□ -0.29
COL4A1-201ENST00000375820 TLR9Q9NR96 1032 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 EXTL2Q9UBQ6 330 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 hCG_1807616A0A1W2PRN6 198 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 NOTOA8MTQ0 251 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 KDELR3O43731 214 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 BRINP1O60477 761 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 PDSS1Q5T2R2 415 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 EPGNQ6UW88 154 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 UBE2Q1Q7Z7E8 422 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 LHFPL3Q86UP9 236 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 ZNF761Q86XN6 746 aaPredicted RBP13.21□□□□□ -0.29
COL4A1-201ENST00000375820 CILP2Q8IUL8 1156 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 DPH2Q9BQC3 489 aaPredicted RBP13.21□□□□□ -0.29
COL4A1-201ENST00000375820 TMEM185BQ9H7F4 350 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 ZBTB26Q9HCK0 441 aa13.21□□□□□ -0.29
COL4A1-201ENST00000375820 TEX13CA0A0J9YWL9 993 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 SEC14L5O43304 696 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 PDYNP01213 254 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 GMPRP36959 345 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 ARHGAP1Q07960 439 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 PCLAFQ15004 111 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 PIAS4Q8N2W9 510 aaPredicted RBP13.21□□□□□ -0.3
COL4A1-201ENST00000375820 C12orf76Q8N812 135 aaPredicted RBP13.21□□□□□ -0.3
COL4A1-201ENST00000375820 OR56A1Q8NGH5 318 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 OR13C3Q8NGS6 347 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 NPLOC4Q8TAT6 608 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 GNPDA2Q8TDQ7 276 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 FCAMRQ8WWV6 532 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 CRTAC1Q9NQ79 661 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 B4GALT6Q9UBX8 382 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 IL20RAQ9UHF4 553 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 GLS2Q9UI32 602 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 PSAT1Q9Y617 370 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 LEFTY1O75610 366 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 FGF18O76093 207 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 H2BFMP0C1H6 154 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 SLC18A1P54219 525 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 TGFBIQ15582 683 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 CDNFQ49AH0 187 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 LRFN4Q6PJG9 635 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 Q6ZVL8 140 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 FAM217AQ8IXS0 508 aa13.21□□□□□ -0.3
COL4A1-201ENST00000375820 FUBP3Q96I24 572 aaKnown RBP eCLIP13.21□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF717Q9BY31 904 aaPredicted RBP13.21□□□□□ -0.3
COL4A1-201ENST00000375820 A0A1W2PP55 124 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 LATO43561 262 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 ARL6IP5O75915 188 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 HLA-DPB1P04440 258 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 C9orf43Q8TAL5 461 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 PTCHD1Q96NR3 888 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 HINT2Q9BX68 163 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 MTMR10Q9NXD2 777 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 CAPN5O15484 640 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 MT-ND5P03915 603 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 MAS1P04201 325 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 CELP19835 753 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 GINS1Q14691 196 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 RHEBQ15382 184 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 FCRLBQ6BAA4 426 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 IFNL1Q8IU54 200 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 TSACCQ96A04 125 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 PEBP4Q96S96 227 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 EIF5A2Q9GZV4 153 aaKnown RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 PRTFDC1Q9NRG1 225 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 VSTM5A8MXK1 200 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 SYNGR4O95473 234 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF35P13682 527 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 DIO3P55073 304 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 SLC25A11Q02978 314 aaKnown RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 ITPRIPL2Q3MIP1 535 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 FAM69BQ5VUD6 431 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 LRRN1Q6UXK5 716 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 DNAJB8Q8NHS0 232 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 RADILQ96JH8 1075 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 TMEM121BQ9BXQ6 578 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 PREX1Q8TCU6 1659 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 A0A1B0GVC2 190 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 LEPRP48357 1165 aaKnown RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 POU6F2P78424 691 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 PRR18Q8N4B5 295 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 MSL3Q8N5Y2 521 aaKnown RBP13.2□□□□□ -0.3
COL4A1-201ENST00000375820 FAM86B1Q8N7N1 296 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 FTSJ1Q9UET6 329 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 ALG10BQ5I7T1 473 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 ZNF678Q5SXM1 525 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 RAET1LQ5VY80 246 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 KIAA1614Q5VZ46 1190 aa13.2□□□□□ -0.3
COL4A1-201ENST00000375820 CFAP77Q6ZQR2 320 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms