RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 DENND6BQ8NEG7 585 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 CXorf40AQ8TE69 158 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 TFGQ92734 400 aaPredicted RBP21.12■□□□□ 0.97
UPF3A-201ENST00000351487 SLC38A4Q969I6 547 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 PDXPQ96GD0 296 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 ZFYVE19Q96K21 471 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 CXorf36Q9H7Y0 433 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 ENPP4Q9Y6X5 453 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 PMF1-BGLAPU3KQ54 211 aa21.12■□□□□ 0.97
UPF3A-201ENST00000351487 COL4A3Q01955 1670 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 CLCA1A8K7I4 914 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 HEPACAM2A8MVW5 462 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 GSSP48637 474 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 ITGADQ13349 1161 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 DEPDC1Q5TB30 811 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 KHDRBS2Q5VWX1 349 aaKnown RBP21.11■□□□□ 0.97
UPF3A-201ENST00000351487 NATD1Q8N6N6 113 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 PLA2G15Q8NCC3 412 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 MS4A8Q9BY19 250 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 NLNQ9BYT8 704 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 WASH6PQ9NQA3 447 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 TMEM98Q9Y2Y6 226 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 RWDD3Q9Y3V2 267 aa21.11■□□□□ 0.97
UPF3A-201ENST00000351487 RECKO95980 971 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 CDK1P06493 297 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 RHCEP18577 417 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 ATP1A4Q13733 1029 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 BTLAQ7Z6A9 289 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 OR5K2Q8NHB8 316 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 RAB7BQ96AH8 199 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 LGALS12Q96DT0 336 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 NEURL3Q96EH8 262 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 HDAC8Q9BY41 377 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 ZNF226Q9NYT6 803 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 SPATA7Q9P0W8 599 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 DPP7Q9UHL4 492 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 HCN4Q9Y3Q4 1203 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 PRKAB1Q9Y478 270 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 CCDC88CQ9P219 2028 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 C5orf67F2Z3F1 127 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 J3KTA2 159 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 TOR1BO14657 336 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 P2RY2P41231 377 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 SAXO2Q658L1 398 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 REEP3Q6NUK4 255 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 ADGRF3Q8IZF5 1079 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 MFSD4AQ8N468 514 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 OR9Q2Q8NGE9 314 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 OR6Q1Q8NGQ2 317 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 AIF1LQ9BQI0 150 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 ACAT2Q9BWD1 397 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 ZNF556Q9HAH1 456 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 TAC3Q9UHF0 121 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 ENOPH1Q9UHY7 261 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 RAB23Q9ULC3 237 aa21.1■□□□□ 0.97
UPF3A-201ENST00000351487 KIAA0100Q14667 2235 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 TRBC2A0A5B9 178 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 LINC01553A4QN01 128 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 ANKDD1BA6NHY2 528 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 C1QTNF3-AMACRE9PGA6 284 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 CBLP22681 906 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 CXCR2P25025 360 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 C21orf33P30042 268 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 HSD17B2P37059 387 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SLC19A1P41440 591 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SPRED2Q7Z698 418 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 DSG4Q86SJ6 1040 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 ADCK1Q86TW2 530 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 MMAAQ8IVH4 418 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SFTPA1Q8IWL2 248 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 C2orf73Q8N5S3 287 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 ANKRD53Q8N9V6 530 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 APOBEC4Q8WW27 367 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 OR5P2Q8WZ92 322 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 PROX1Q92786 737 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 GGHQ92820 318 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 ALOXE3Q9BYJ1 711 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SLIRPQ9GZT3 109 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SLC23A2Q9UGH3 650 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 OSGIN1Q9UJX0 560 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 KCND3Q9UK17 655 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SH3GLB1Q9Y371 365 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 FAM32AQ9Y421 112 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 GADD45GO95257 159 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 FUCA1P04066 466 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 RPN2P04844 631 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SERPINB1P30740 379 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 BSGP35613 385 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 IDH2P48735 452 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 PSMD7P51665 324 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 MAPK12P53778 367 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 CYP27C1Q4G0S4 372 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 LRRTM4Q86VH4 590 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 HEATR4Q86WZ0 1026 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 SMG7Q92540 1137 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 RPL3LQ92901 407 aaKnown RBP21.09■□□□□ 0.97
UPF3A-201ENST00000351487 MENTQ9BUN1 341 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 ANKHQ9HCJ1 492 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 NEUROD4Q9HD90 331 aa21.09■□□□□ 0.97
UPF3A-201ENST00000351487 A4GALTQ9NPC4 353 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms