RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TBC1D29Q9UFV1 150 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 DGKBQ9Y6T7 804 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 MDC1Q14676 2089 aaKnown RBP12.25□□□□□ -0.45
CLK3-201ENST00000345005 GOLGA4Q13439 2230 aaKnown RBP12.25□□□□□ -0.45
CLK3-201ENST00000345005 KRBA1A5PL33 1030 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 ZNF99A8MXY4 864 aaPredicted RBP12.25□□□□□ -0.45
CLK3-201ENST00000345005 M0QX08 132 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 UPK1AO00322 258 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 SLC16A6O15403 523 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 LRATO95237 230 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 TGFB1P01137 390 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 TFPTP0C1Z6 253 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 NCK1P16333 377 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 TIA1P31483 386 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLK3-201ENST00000345005 ACTR1BP42025 376 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 HNRNPFP52597 415 aaKnown RBP12.25□□□□□ -0.45
CLK3-201ENST00000345005 CXCR4P61073 352 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 ACTR1AP61163 376 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 RAE1P78406 368 aaKnown RBP12.25□□□□□ -0.45
CLK3-201ENST00000345005 GAS6Q14393 721 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 ALG11Q2TAA5 492 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 EID3Q8N140 333 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 ZNF740Q8NDX6 193 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 OR13H1Q8NG92 308 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 OR5K1Q8NHB7 308 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 PPM1MQ96MI6 270 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 NRTNQ99748 197 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 TMEM168Q9H0V1 697 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 KCNH6Q9H252 994 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 SPNS1Q9H2V7 528 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 XKR8Q9H6D3 395 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 FBXO8Q9NRD0 319 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 C2orf42Q9NWW7 574 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 AHSPQ9NZD4 102 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 DAPK2Q9UIK4 370 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 ICKQ9UPZ9 632 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 MAN2B2Q9Y2E5 1009 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 TPRKBQ9Y3C4 175 aa12.25□□□□□ -0.45
CLK3-201ENST00000345005 PLXND1Q9Y4D7 1925 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 A0A096LPI6 279 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 GNG14A0A1W2PPG7 69 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 H7BY64 318 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 GNGT2O14610 69 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 PCDH7O60245 1069 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 NDUFS2O75306 463 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 BCAS1O75363 584 aaPredicted RBP12.24□□□□□ -0.45
CLK3-201ENST00000345005 SH3BGRLO75368 114 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 RETP07949 1114 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 AK4P27144 223 aaPredicted RBP12.24□□□□□ -0.45
CLK3-201ENST00000345005 PSMB5P28074 263 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 ELK4P28324 431 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 SHMT2P34897 504 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 POLR2IP36954 125 aaKnown RBP12.24□□□□□ -0.45
CLK3-201ENST00000345005 KIR3DL1P43629 444 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 PHC1P78364 1004 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 ABATP80404 500 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 REEP5Q00765 189 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 MVKQ03426 396 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 MTAPQ13126 283 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 PHACTR4Q8IZ21 702 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 METTL4Q8N3J2 472 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 CHDHQ8NE62 594 aaPredicted RBP12.24□□□□□ -0.45
CLK3-201ENST00000345005 GPR156Q8NFN8 814 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 OR2A1Q8NGT9 310 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 FKBP10Q96AY3 582 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 TAMM41Q96BW9 452 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 TBC1D20Q96BZ9 403 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 PRAP1Q96NZ9 151 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 FUNDC2Q9BWH2 189 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 OR51B5Q9H339 312 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 TOR3AQ9H497 397 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 CCNB1IP1Q9NPC3 277 aa12.24□□□□□ -0.45
CLK3-201ENST00000345005 CUEDC1Q9NWM3 386 aaPredicted RBP12.24□□□□□ -0.45
CLK3-201ENST00000345005 IGHV1OR15-9A0A0B4J2B8 117 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 A0A1W2PPC4 97 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ISPDA4D126 451 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 M0R3G1 203 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 CCNDBP1O95273 360 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 CST1P01037 141 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ITGAMP11215 1152 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 F3P13726 295 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 COX7A2P14406 83 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 HPCAL1P37235 193 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 TRPC1P48995 793 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 OR4D2P58180 307 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 YBX1P67809 324 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 CSNK2BP67870 215 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 PLIN5Q00G26 463 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ILF3Q12906 894 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLK3-201ENST00000345005 LRIF1Q5T3J3 769 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 AGAP7PQ5VUJ5 663 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 TMEM214Q6NUQ4 689 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 TBPL2Q6SJ96 375 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 COMMD6Q7Z4G1 85 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 SVOPQ8N4V2 548 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 OR7A2PQ8NGA2 310 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 OR8J2Q8NGG1 315 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 CXorf40BQ96DE9 158 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ALPK1Q96QP1 1244 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 FAM120CQ9NX05 1096 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms