RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TIGD3Q6B0B8 471 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TEX261Q6UWH6 196 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 DNAJB8Q8NHS0 232 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 TMEM80Q96HE8 168 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 SLC6A18Q96N87 628 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 MTERF1Q99551 399 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 ACER3Q9NUN7 267 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 SEC14L4Q9UDX3 406 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 RIMKLBQ9ULI2 386 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 MGAT4AQ9UM21 535 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 VPS9D1Q9Y2B5 631 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 U3KQ87 197 aa12.88□□□□□ -0.35
CCDC88C-201ENST00000331194 A0A1B0GVC2 190 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 RRN3P2A6NIE6 340 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 A6NIN4 97 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 PDE9AO76083 593 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 CTSHP09668 335 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM157BP0CG42 384 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 PRPS2P11908 318 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 AMD1P17707 334 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 PXNP49023 591 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 DBPQ10586 325 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 TWF1Q12792 350 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 IL18Q14116 193 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 INSL4Q14641 139 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 DDI2Q5TDH0 399 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 OR2G6Q5TZ20 316 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 METTL23Q86XA0 190 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 CARNMT1Q8N4J0 409 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 C1GALT1C1Q96EU7 318 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 MGME1Q9BQP7 344 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 DPCDQ9BVM2 203 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 ATPIF1Q9UII2 106 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 PRAMEF33A0A0G2JMD5 474 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 CBX4O00257 560 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 ACSL4O60488 711 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 PRAMEF10O60809 474 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 CFL1P23528 166 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 SMSP52788 366 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 DSTNP60981 165 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 RPS24P62847 133 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 RPS25P62851 125 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 FGFBP1Q14512 234 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 RGNQ15493 299 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 C10orf120Q5SQS8 335 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 CD300LGQ6UXG3 332 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 USP30Q70CQ3 517 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 C16orf62Q7Z3J2 963 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 LAS2Q8IYD9 372 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 OR6K2Q8NGY2 324 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 SKA2Q8WVK7 121 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 FATE1Q969F0 183 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 MSLNLQ96KJ4 702 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 NELL2Q99435 816 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 KATNB1Q9BVA0 655 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 MCOLN1Q9GZU1 580 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM105AQ9NUU6 356 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 GPATCH2Q9NW75 528 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 ARL15Q9NXU5 204 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 ACSL6Q9UKU0 697 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 ABT1Q9ULW3 272 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 PCDHB11Q9Y5F2 797 aa12.87□□□□□ -0.35
CCDC88C-201ENST00000331194 MYO16Q9Y6X6 1858 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 FADS2P1A8MWK0 482 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 AVPR1BP47901 424 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 CRISP1P54107 249 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF57Q68EA5 555 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 KIAA1324Q6UXG2 1013 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 GPR155Q7Z3F1 870 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 COMMD7Q86VX2 200 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 IQCF1Q8N6M8 205 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF431Q8TF32 576 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 TRIM62Q9BVG3 475 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 RACGAP1Q9H0H5 632 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 NDUFB11Q9NX14 153 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 FTSJ1Q9UET6 329 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 MAPRE3Q9UPY8 281 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 PCDHB9Q9Y5E1 797 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 SPIN1Q9Y657 262 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 TEX51A0A1B0GUA7 166 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 INMT-MINDY4F8WBC2 141 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 SEC14L5O43304 696 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ITGB7P26010 798 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ATAT1Q5SQI0 421 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ASB18Q6ZVZ8 466 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 OR4K1Q8NGD4 311 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 NFKBIDQ8NI38 313 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 GIMAP1Q8WWP7 306 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 PKP4Q99569 1192 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 UQCC2Q9BRT2 126 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 NMNAT1Q9HAN9 279 aaPredicted RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 CNOT2Q9NZN8 540 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ZAR1LA6NP61 321 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 NUPL2O15504 423 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 IGHA2P01877 340 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 RHAGQ02094 409 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 VEZF1Q14119 521 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 SNAPC1Q16533 368 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 ZNF792Q3KQV3 632 aa12.86□□□□□ -0.35
CCDC88C-201ENST00000331194 FAM180BQ6P0A1 224 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms