RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MAFKO60675 156 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF41P51814 821 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 METTL4Q8N3J2 472 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 KIAA1191Q96A73 305 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 CACNG6Q9BXT2 260 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 Q9N2J8 555 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 CDC14AQ9UNH5 594 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 LAMB4A4D0S4 1761 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 A0A0U1RQJ8 604 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 FAM170BA6NMN3 283 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 A8MVJ9 347 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 EARS2Q5JPH6 523 aaKnown RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 ATF5Q9Y2D1 282 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 WDR4P57081 412 aaKnown RBP13.79□□□□□ -0.2
COL7A1-201ENST00000328333 DCST2Q5T1A1 773 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 HFE2Q6ZVN8 426 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 PYROXD2Q8N2H3 581 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 DOCK11Q5JSL3 2073 aa13.79□□□□□ -0.2
COL7A1-201ENST00000328333 ECI2O75521 394 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 OAS1P00973 400 aaKnown RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF35P13682 527 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 NFATC3Q12968 1075 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 TUSC3Q13454 348 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 NTRK2Q16620 822 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 UGT8Q16880 541 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 C6orf141Q5SZD1 244 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 SLC29A4Q7RTT9 530 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 PRRT1Q99946 306 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 ACBD6Q9BR61 282 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 PPIL3Q9H2H8 161 aaKnown RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 KLHL21Q9UJP4 597 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 HIF3AQ9Y2N7 669 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 FBXO7Q9Y3I1 522 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 MDFIC2A0A1B0GVS7 189 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 KIAA0513O60268 411 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 TAGLNQ01995 201 aaKnown RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 NELL2Q99435 816 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 TPT1P8Q9HAU6 139 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 KCNJ16Q9NPI9 418 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 UQCRC2P22695 453 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 RAB8AP61006 207 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 MRPL49Q13405 166 aaKnown RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF674Q2M3X9 581 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 ADGRA1Q86SQ6 560 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 HOXB13Q92826 284 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 MED30Q96HR3 178 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 FBXL20Q96IG2 436 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 C7orf34Q96L11 122 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 ASB6Q9NWX5 421 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 CAMK2DQ13557 499 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 FAM83HQ6ZRV2 1179 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 NAT8LQ8N9F0 302 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 C3orf58Q8NDZ4 430 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 ADAMTS19Q8TE59 1207 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 NSMAFQ92636 917 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 GAL3ST4Q96RP7 486 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 SLC7A11Q9UPY5 501 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 C20orf202A1L168 122 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 TOR1AO14656 332 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 RBMS1P29558 406 aaKnown RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 MPP7Q5T2T1 576 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 GNPDA2Q8TDQ7 276 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 NOX1Q9Y5S8 564 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 KNDC1Q76NI1 1749 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 NEDD8-MDP1E9PL57 170 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 CDH15P55291 814 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 SPOCK1Q08629 439 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 CDNFQ49AH0 187 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 OR56A3Q8NH54 315 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 ABCG4Q9H172 646 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 CLCA3PQ9Y6N3 262 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 FUOMA2VDF0 154 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 APODP05090 189 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 HLA-EP13747 358 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 CNTN2Q02246 1040 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 EMC10Q5UCC4 262 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 CMTM1Q8IZ96 169 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 SIDT2Q8NBJ9 832 aaKnown RBP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 OR56B2PQ8NGI1 322 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 OR2T35Q8NGX2 323 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 OR8K3Q8NH51 312 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 FUBP3Q96I24 572 aaKnown RBP eCLIP13.78□□□□□ -0.2
COL7A1-201ENST00000328333 TGM7Q96PF1 710 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 UTS2RQ9UKP6 389 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 CYP8B1Q9UNU6 501 aa13.78□□□□□ -0.2
COL7A1-201ENST00000328333 AOC2O75106 756 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 MINDY4Q4G0A6 757 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 CREB3L2Q70SY1 520 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 GPR149Q86SP6 731 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 POGLUT1Q8NBL1 392 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 SUN3Q8TAQ9 357 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 SLC6A7Q99884 636 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 ACTR10Q9NZ32 417 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 FZD10Q9ULW2 581 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 PCDH17O14917 1159 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 CD34P28906 385 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 FXYD6P3P58550 94 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 OTOP3Q7RTS5 596 aa13.77□□□□□ -0.2
COL7A1-201ENST00000328333 RHEBL1Q8TAI7 183 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 193.5 ms