RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZNF705BP0CI00 300 aaPredicted RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CD34P28906 385 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CTSOP43234 321 aaPredicted RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 C3orf58Q8NDZ4 430 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 OR4F6Q8NGB9 312 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SLC22A8Q8TCC7 542 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 COQ10AQ96MF6 247 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 EPHA6Q9UF33 1036 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SOBPA7XYQ1 873 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 EBLN1P0CF75 366 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 RBP7Q96R05 134 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 PDZD7Q9H5P4 517 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ASB6Q9NWX5 421 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ATRNO75882 1429 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 TNS2Q63HR2 1409 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 OIP5O43482 229 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 DHCR24Q15392 516 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ELP2Q6IA86 826 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 TIFABQ6ZNK6 161 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 C4orf32Q8N8J7 132 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 HERVK_113Q902F9 699 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 GPR22Q99680 433 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 MRM3Q9HC36 420 aaKnown RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 TEX264Q9Y6I9 313 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 HSPE1-MOB4S4R3N1 261 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 MYO18AQ92614 2054 aaKnown RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SPATA31D3P0C874 917 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 UNGP13051 313 aaPredicted RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 LAG3P18627 525 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 OXTRP30559 389 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SOX9P48436 509 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 POLR2HP52434 150 aaKnown RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 RIN1Q13671 783 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 MFSD13AQ14CX5 517 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SPATA31D4Q6ZUB0 917 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CNOT9Q92600 299 aaKnown RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ASF1BQ9NVP2 202 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ARMC1Q9NVT9 282 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 TLL1O43897 1013 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CLCNKBP51801 687 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SPATC1Q76KD6 591 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 THAP4Q8WY91 577 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CCM2Q9BSQ5 444 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 FZD3Q9NPG1 666 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 HHLA1C9JL84 531 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 AHSA1O95433 338 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 EDNRBP24530 442 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 STT3AP46977 705 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 DAOAP59103 153 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SIRPB2Q5JXA9 342 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 PLPP4Q5VZY2 271 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 OR4K17Q8NGC6 315 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SLC6A16Q9GZN6 736 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SNAP29O95721 258 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CLIC3O95833 236 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 MAOAP21397 527 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 CAP1Q01518 475 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 MLLT1Q03111 559 aaPredicted RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 PCLAFQ15004 111 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 ARSJQ5FYB0 599 aaPredicted RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 PRSS58Q8IYP2 241 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 GDPD1Q8N9F7 314 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 OR13C3Q8NGS6 347 aa13.38□□□□□ -0.27
CSPG4-201ENST00000308508 VRK1Q99986 396 aaPredicted RBP13.38□□□□□ -0.27
CSPG4-201ENST00000308508 SPATA31A5Q5VU36 1347 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 SPATA31A7Q8IWB4 1347 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 DENRO43583 198 aaKnown RBP13.37□□□□□ -0.27
CSPG4-201ENST00000308508 GMDSO60547 372 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 SC5DO75845 299 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 MMP3P08254 477 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 UQCRC2P22695 453 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 CERS1P27544 350 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 TMPRSS12Q86WS5 348 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 SLC17A6Q9P2U8 582 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 CYP8B1Q9UNU6 501 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 TMEM14AQ9Y6G1 99 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 DNAJB6O75190 326 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 SOX30O94993 753 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 HLA-DQB2P05538 268 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 EVI2BP34910 448 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 LSAMPQ13449 338 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ATG9BQ674R7 924 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 VITQ6UXI7 678 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 OR8K3Q8NH51 312 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 IL31RAQ8NI17 732 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 FNIP2Q9P278 1114 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 LSSP48449 732 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 KCNAB2Q13303 367 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 TDGQ13569 410 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 C10orf62Q5T681 223 aaPredicted RBP13.37□□□□□ -0.27
CSPG4-201ENST00000308508 SLC24A5Q71RS6 500 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 PIP5K1AQ99755 562 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 DPYSL5Q9BPU6 564 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 PPRC1Q5VV67 1664 aaKnown RBP13.37□□□□□ -0.27
CSPG4-201ENST00000308508 OTOL1A6NHN0 477 aaPredicted RBP13.37□□□□□ -0.27
CSPG4-201ENST00000308508 CXorf49A8MYA2 514 aaPredicted RBP13.37□□□□□ -0.27
CSPG4-201ENST00000308508 MRPL3P09001 348 aaKnown RBP13.37□□□□□ -0.27
CSPG4-201ENST00000308508 ART1P52961 327 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 GPX6P59796 221 aa13.37□□□□□ -0.27
CSPG4-201ENST00000308508 SLC35F1Q5T1Q4 408 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms