RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DYRK1AQ13627 763 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 RABL3Q5HYI8 236 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 EXOSC6Q5RKV6 272 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 OR51E2Q9H255 320 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 MEAF6Q9HAF1 191 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 COL20A1Q9P218 1284 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 SEC14L2O76054 403 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 MAGEB1P43366 347 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 NR0B1P51843 470 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 RPS3AP61247 264 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 TTLL10Q6ZVT0 673 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 MMAAQ8IVH4 418 aaKnown RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 OR5M3Q8NGP4 307 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 PGAM5Q96HS1 289 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 C1orf21Q9H246 121 aa13.47□□□□□ -0.25
CCDC88A-201ENST00000263630 MATN3O15232 486 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 TPPPO94811 219 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF559Q9BR84 538 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 POLDIP3Q9BY77 421 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 IGSF9Q9P2J2 1179 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 CNTNAP1P78357 1384 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 TRBC2A0A5B9 178 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC2A1P11166 492 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 C6P13671 934 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 COMMD7Q86VX2 200 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 OR5B17Q8NGF7 314 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 FAM46BQ96A09 425 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 CDC6Q99741 560 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 MYH14Q7Z406 1995 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF608Q9ULD9 1512 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC31A1O15431 190 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 SOX30O94993 753 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 MS4A12Q9NXJ0 267 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 CD9P21926 228 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 TNFSF4P23510 183 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 MAP2K3P46734 347 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 P2RX1P51575 399 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 BCL2L15Q5TBC7 163 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 ARHGAP11AQ6P4F7 1023 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 NCCRP1Q6ZVX7 275 aaPredicted RBP13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 GKN2Q86XP6 184 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 SIDT2Q8NBJ9 832 aaKnown RBP13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 OR2T33Q8NG76 320 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 CTPS2Q9NRF8 586 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 CREB1P16220 341 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 HTR2BP41595 481 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 TPRA1Q86W33 373 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF610Q8N9Z0 462 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 FAM84AQ96KN4 292 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 RDH12Q96NR8 316 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 KLHL21Q9UJP4 597 aa13.46□□□□□ -0.25
CCDC88A-201ENST00000263630 CNTRLQ7Z7A1 2325 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 OR6C74A6NCV1 312 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 DFNA5O60443 496 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 GGT2P36268 569 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 RPL23AP62750 156 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 IL10RBQ08334 325 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 IDO2Q6ZQW0 420 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 PLPPR4Q7Z2D5 763 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 C3orf58Q8NDZ4 430 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 NPLOC4Q8TAT6 608 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 CCM2Q9BSQ5 444 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 FETUBQ9UGM5 382 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 IL36AQ9UHA7 158 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 UBFD1O14562 309 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 GTF2BQ00403 316 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 NOMO1Q15155 1222 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 PAPD4Q6PIY7 484 aaKnown RBP13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 C12orf29Q8N999 325 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 APMAPQ9HDC9 416 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 ASF1BQ9NVP2 202 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 EVLQ9UI08 416 aaPredicted RBP13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 SNAPINO95295 136 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF34Q8IZ26 560 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 KIAA0319LQ8IZA0 1049 aa13.46□□□□□ -0.26
CCDC88A-201ENST00000263630 YDJCA8MPS7 323 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 OR8K3Q8NH51 312 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 A8MVM7 634 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 ALDOBP05062 364 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 GPC2Q8N158 579 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 TXNDC15Q96J42 360 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 OR2AG1Q9H205 316 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 E9PI62 339 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 RPL7AP62424 266 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 LANCL3Q6ZV70 420 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF100Q8IYN0 542 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 HS3ST5Q8IZT8 346 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 OR6N2Q8NGY6 317 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SHDQ96IW2 340 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 PRODH2Q9UF12 536 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 GGT3PA6NGU5 568 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 CH25HO95992 272 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 TPT1P13693 172 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 ADH7P40394 386 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 PITPNBP48739 271 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 TAS2R30P59541 319 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 TCEANCQ8N8B7 351 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 WFIKKN2Q8TEU8 576 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC32A1Q9H598 525 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms