RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 SRSF1Q07955 248 aaKnown RBP eCLIP21.5■■□□□ 1.03
LSM4-201ENST00000252816 ACER2Q5QJU3 275 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 RPS27LQ71UM5 84 aaKnown RBP21.5■■□□□ 1.03
LSM4-201ENST00000252816 ACOT4Q8N9L9 421 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 ARMC2Q8NEN0 867 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 NFAM1Q8NET5 270 aaPredicted RBP21.5■■□□□ 1.03
LSM4-201ENST00000252816 OR1N1Q8NGS0 311 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 ADAMTS18Q8TE60 1221 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 MZB1Q8WU39 189 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 MAPKAP1Q9BPZ7 522 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 RNF32Q9H0A6 362 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 LYRM4Q9HD34 91 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 TMEM216Q9P0N5 145 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 PSMC3IPQ9P2W1 217 aaPredicted RBP21.5■■□□□ 1.03
LSM4-201ENST00000252816 TEKT2Q9UIF3 430 aa21.5■■□□□ 1.03
LSM4-201ENST00000252816 LRRK2Q5S007 2527 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 IQANK1A0A1B0GTG1 560 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 CLEC18AA5D8T8 446 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 SCELO95171 688 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 SHBGP04278 402 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 RPS17P08708 135 aaKnown RBP21.49■■□□□ 1.03
LSM4-201ENST00000252816 HIST1H1TP22492 207 aaPredicted RBP21.49■■□□□ 1.03
LSM4-201ENST00000252816 TNFRSF8P28908 595 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 PPP2R1BP30154 601 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 HSD17B7P56937 341 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 RPS13P62277 151 aaKnown RBP21.49■■□□□ 1.03
LSM4-201ENST00000252816 ZRSR2Q15696 482 aaKnown RBP21.49■■□□□ 1.03
LSM4-201ENST00000252816 CLEC18BQ6UXF7 455 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 CLNKQ7Z7G1 428 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 CRLF3Q8IUI8 442 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 ZNF595Q8IYB9 648 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 BEST3Q8N1M1 668 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 CLEC18CQ8NCF0 446 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 ELP5Q8TE02 316 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 ZNF354BQ96LW1 612 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 ROGDIQ9GZN7 287 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 ANKZF1Q9H8Y5 726 aa21.49■■□□□ 1.03
LSM4-201ENST00000252816 A8MT66 165 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 GOLGA8RI6L899 631 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 CLDN4O14493 209 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 CLDN9O95484 217 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 SSR2P43308 183 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 ST13P50502 369 aaKnown RBP21.48■■□□□ 1.03
LSM4-201ENST00000252816 NEK2P51955 445 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 CCNG1P51959 295 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 TRAF3Q13114 568 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 SLC13A2Q13183 592 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 MRPL49Q13405 166 aaKnown RBP21.48■■□□□ 1.03
LSM4-201ENST00000252816 AP5B1Q2VPB7 878 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 WDR20Q8TBZ3 569 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 ATP6V1E2Q96A05 226 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 NTMT1Q9BV86 223 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP21.48■■□□□ 1.03
LSM4-201ENST00000252816 TBK1Q9UHD2 729 aa21.48■■□□□ 1.03
LSM4-201ENST00000252816 MRPS33Q9Y291 106 aaKnown RBP21.48■■□□□ 1.03
LSM4-201ENST00000252816 USP9XQ93008 2570 aaPredicted RBP21.47■■□□□ 1.03
LSM4-201ENST00000252816 TRAV17A0A0B4J275 112 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 A0A1B0GTL3 188 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 OR5H15A6NDH6 313 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 PLPP1O14494 284 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 ETHE1O95571 254 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 RCN2Q14257 317 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 NR6A1Q15406 480 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 OR4C11Q6IEV9 310 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 GRHL3Q8TE85 626 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 ZNF483Q8TF39 744 aaPredicted RBP21.47■■□□□ 1.03
LSM4-201ENST00000252816 UBLCP1Q8WVY7 318 aaPredicted RBP21.47■■□□□ 1.03
LSM4-201ENST00000252816 RGMAQ96B86 450 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 REPS1Q96D71 796 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 ZNF717Q9BY31 904 aaPredicted RBP21.47■■□□□ 1.03
LSM4-201ENST00000252816 SLC29A3Q9BZD2 475 aa21.47■■□□□ 1.03
LSM4-201ENST00000252816 SEMA4BQ9NPR2 832 aaPredicted RBP21.47■■□□□ 1.03
LSM4-201ENST00000252816 PNO1Q9NRX1 252 aaKnown RBP21.47■■□□□ 1.03
LSM4-201ENST00000252816 SETXQ7Z333 2677 aaKnown RBP21.47■■□□□ 1.03
LSM4-201ENST00000252816 MYOCOSA0A1B0GUC4 107 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 FOXO6A8MYZ6 492 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 PPP6CO00743 305 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 CTNSO60931 367 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 MYO1DO94832 1006 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 PYGBP11216 843 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 PTX3P26022 381 aaPredicted RBP21.46■■□□□ 1.03
LSM4-201ENST00000252816 ARL1P40616 181 aaPredicted RBP21.46■■□□□ 1.03
LSM4-201ENST00000252816 RAP1GDS1P52306 607 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 CDH13P55290 713 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 TAS2R50P59544 299 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 MEP1AQ16819 746 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 RPUSD3Q6P087 351 aaKnown RBP21.46■■□□□ 1.03
LSM4-201ENST00000252816 SLC5A8Q8N695 610 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 ACMSDQ8TDX5 336 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 CCDC77Q9BR77 488 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 C1QTNF3Q9BXJ4 246 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 FBXW2Q9UKT8 454 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 ESPL1Q14674 2120 aa21.46■■□□□ 1.03
LSM4-201ENST00000252816 A0A1W2PPM1 405 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 FOXE1O00358 373 aaPredicted RBP21.45■■□□□ 1.02
LSM4-201ENST00000252816 CBX6O95503 412 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 TSPAN8P19075 237 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 PHEXP78562 749 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 SLAMF1Q13291 335 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 UBAP2LQ14157 1087 aaKnown RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms