RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 SCUBE1Q8IWY4 988 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 D2HGDHQ8N465 521 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 NATD1Q8N6N6 113 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 AMER3Q8N944 861 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 VPS37AQ8NEZ2 397 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 OR8K5Q8NH50 307 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 IFI44Q8TCB0 444 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 KLHL6Q8WZ60 621 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 GTF2H4Q92759 462 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 UTP4Q969X6 686 aaKnown RBP11.18□□□□□ -0.62
CLN6-223ENST00000637823 ZNF285Q96NJ3 590 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 SERINC2Q96SA4 455 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 CDRT15Q96T59 188 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 GPATCH1Q9BRR8 931 aaKnown RBP11.18□□□□□ -0.62
CLN6-223ENST00000637823 LRFN3Q9BTN0 628 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 DUSP26Q9BV47 211 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 BHLHE41Q9C0J9 482 aaPredicted RBP11.18□□□□□ -0.62
CLN6-223ENST00000637823 IRF2BPLQ9H1B7 796 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 LRRN3Q9H3W5 708 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 COPS7BQ9H9Q2 264 aaPredicted RBP11.18□□□□□ -0.62
CLN6-223ENST00000637823 SH3BP4Q9P0V3 963 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 PDP2Q9P2J9 529 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 MAN2B2Q9Y2E5 1009 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 ASB4Q9Y574 426 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 PCDHGA7Q9Y5G6 932 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 SLC22A7Q9Y694 548 aa11.18□□□□□ -0.62
CLN6-223ENST00000637823 ASCC3Q8N3C0 2202 aaKnown RBP11.18□□□□□ -0.62
CLN6-223ENST00000637823 CACNA1HO95180 2353 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 A0A096LPI6 279 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 PRSS51A0A1B0GVH4 220 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 C4orf51C9J302 202 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 FLRT2O43155 660 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 HCRTR1O43613 425 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 ERN1O75460 977 aaKnown RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 CPNE6O95741 557 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 LDOC1O95751 146 aaPredicted RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 RPLP0P05388 317 aaKnown RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 PIM1P11309 404 aaPredicted RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 CKMT2P17540 419 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 ALOX12P18054 663 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 DDCP20711 480 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 EMP3P54852 163 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 MC1RQ01726 317 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 NDUFA9Q16795 377 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 PRTGQ2VWP7 1150 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 SNAP47Q5SQN1 464 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 TMTC4Q5T4D3 741 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 PGM2L1Q6PCE3 622 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 DLEU7Q6UYE1 221 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 BNC2Q6ZN30 1099 aaPredicted RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 FBXW8Q8N3Y1 598 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 OR4D9Q8NGE8 314 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 N4BP2L2Q92802 583 aaPredicted RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 PPCDCQ96CD2 204 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 ZNF764Q96H86 408 aaPredicted RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 SLC41A2Q96JW4 573 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 NUDT22Q9BRQ3 303 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 FAIM2Q9BWQ8 316 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 IL1RL2Q9HB29 575 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 MIEF1Q9NQG6 463 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 ENAMQ9NRM1 1142 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 TAS2R7Q9NYW3 318 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 TMEM9Q9P0T7 183 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 KLHL3Q9UH77 587 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 BTNL2Q9UIR0 455 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 BTBD3Q9Y2F9 522 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.17□□□□□ -0.62
CLN6-223ENST00000637823 ADAMTS20P59510 1910 aa11.17□□□□□ -0.62
CLN6-223ENST00000637823 C15orf38-AP3S2A0A0A6YYH1 394 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 A0A1W2PQM1 296 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 H0YHG0 523 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 FXYD1O00168 92 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 PROM1O43490 865 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 B3GALT2O43825 422 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 SCN2BO60939 215 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 ANKRD34CP0C6C1 535 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 MSL3P1P0C860 447 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 NELFEP18615 380 aaKnown RBP11.16□□□□□ -0.62
CLN6-223ENST00000637823 CERS1P27544 350 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 SEPHS1P49903 392 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 WNT3P56703 355 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 SKP1P63208 163 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 TCF15Q12870 199 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 SF3A2Q15428 464 aaKnown RBP11.16□□□□□ -0.62
CLN6-223ENST00000637823 DEFB110Q30KQ9 67 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 SPATS1Q496A3 300 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 DEFB134Q4QY38 66 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 GARNL3Q5VVW2 1013 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 ANKRD26P1Q6NSI1 321 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 NANOGP8Q6NSW7 305 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 NIPAL1Q6NVV3 410 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 ZNF574Q6ZN55 896 aaPredicted RBP11.16□□□□□ -0.62
CLN6-223ENST00000637823 DGLUCYQ7Z3D6 616 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 ARPINQ7Z6K5 226 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 DHDDSQ86SQ9 333 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 ULK2Q8IYT8 1036 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 ARHGEF39Q8N4T4 335 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 FAM47BQ8NA70 645 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 PRSS33Q8NF86 280 aa11.16□□□□□ -0.62
CLN6-223ENST00000637823 ZCCHC10Q8TBK6 192 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms