RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	SCUBE1	Q8IWY4	988 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	D2HGDH	Q8N465	521 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	NATD1	Q8N6N6	113 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	AMER3	Q8N944	861 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	VPS37A	Q8NEZ2	397 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	OR8K5	Q8NH50	307 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	IFI44	Q8TCB0	444 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	KLHL6	Q8WZ60	621 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	GTF2H4	Q92759	462 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	UTP4	Q969X6	686 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	ZNF285	Q96NJ3	590 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	SERINC2	Q96SA4	455 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	CDRT15	Q96T59	188 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	GPATCH1	Q9BRR8	931 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	LRFN3	Q9BTN0	628 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	DUSP26	Q9BV47	211 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	BHLHE41	Q9C0J9	482 aa	Predicted RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	IRF2BPL	Q9H1B7	796 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	LRRN3	Q9H3W5	708 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	COPS7B	Q9H9Q2	264 aa	Predicted RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	SH3BP4	Q9P0V3	963 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	PDP2	Q9P2J9	529 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	MAN2B2	Q9Y2E5	1009 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	ASB4	Q9Y574	426 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	PCDHGA7	Q9Y5G6	932 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	SLC22A7	Q9Y694	548 aa		11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	ASCC3	Q8N3C0	2202 aa	Known RBP	11.18	□□□□□ -0.62
CLN6-223	ENST00000637823	CACNA1H	O95180	2353 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823		A0A096LPI6	279 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	PRSS51	A0A1B0GVH4	220 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	C4orf51	C9J302	202 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	FLRT2	O43155	660 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	HCRTR1	O43613	425 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	ERN1	O75460	977 aa	Known RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	CPNE6	O95741	557 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	LDOC1	O95751	146 aa	Predicted RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	RPLP0	P05388	317 aa	Known RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	PIM1	P11309	404 aa	Predicted RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	CKMT2	P17540	419 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	ALOX12	P18054	663 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	DDC	P20711	480 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	EMP3	P54852	163 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	MC1R	Q01726	317 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	NDUFA9	Q16795	377 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	PRTG	Q2VWP7	1150 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	SNAP47	Q5SQN1	464 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	TMTC4	Q5T4D3	741 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	PGM2L1	Q6PCE3	622 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	DLEU7	Q6UYE1	221 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	BNC2	Q6ZN30	1099 aa	Predicted RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	FBXW8	Q8N3Y1	598 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	OR4D9	Q8NGE8	314 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	N4BP2L2	Q92802	583 aa	Predicted RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	PPCDC	Q96CD2	204 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	ZNF764	Q96H86	408 aa	Predicted RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	SLC41A2	Q96JW4	573 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	NUDT22	Q9BRQ3	303 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	FAIM2	Q9BWQ8	316 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	IL1RL2	Q9HB29	575 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	MIEF1	Q9NQG6	463 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	ENAM	Q9NRM1	1142 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	TAS2R7	Q9NYW3	318 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	TMEM9	Q9P0T7	183 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	KLHL3	Q9UH77	587 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	BTNL2	Q9UIR0	455 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	BTBD3	Q9Y2F9	522 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	ADAMTS20	P59510	1910 aa		11.17	□□□□□ -0.62
CLN6-223	ENST00000637823	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823		A0A1W2PQM1	296 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823		H0YHG0	523 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	FXYD1	O00168	92 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	PROM1	O43490	865 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	B3GALT2	O43825	422 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	SCN2B	O60939	215 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	ANKRD34C	P0C6C1	535 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	MSL3P1	P0C860	447 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	NELFE	P18615	380 aa	Known RBP	11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	CERS1	P27544	350 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	SEPHS1	P49903	392 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	WNT3	P56703	355 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	SKP1	P63208	163 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	TCF15	Q12870	199 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	SF3A2	Q15428	464 aa	Known RBP	11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	DEFB110	Q30KQ9	67 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	SPATS1	Q496A3	300 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	DEFB134	Q4QY38	66 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	GARNL3	Q5VVW2	1013 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	ANKRD26P1	Q6NSI1	321 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	NANOGP8	Q6NSW7	305 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	NIPAL1	Q6NVV3	410 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	ZNF574	Q6ZN55	896 aa	Predicted RBP	11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	DGLUCY	Q7Z3D6	616 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	ARPIN	Q7Z6K5	226 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	DHDDS	Q86SQ9	333 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	ULK2	Q8IYT8	1036 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	ARHGEF39	Q8N4T4	335 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	FAM47B	Q8NA70	645 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	PRSS33	Q8NF86	280 aa		11.16	□□□□□ -0.62
CLN6-223	ENST00000637823	ZCCHC10	Q8TBK6	192 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms