RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SMIM10L1P0DMW3 83 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 NEFHP12036 1026 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 PTX3P26022 381 aaPredicted RBP17.09■□□□□ 0.33
CLN3-239ENST00000628023 SSR2P43308 183 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 KRT6CP48668 564 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 MTTPP55157 894 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 KLC1Q07866 573 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 SSPNQ14714 243 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 ADPRMQ3LIE5 342 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 MINDY4Q4G0A6 757 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 ABHD17CQ6PCB6 329 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 ZC3H7AQ8IWR0 971 aaKnown RBP17.09■□□□□ 0.33
CLN3-239ENST00000628023 METTL6Q8TCB7 284 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 SMIM10Q96HG1 83 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 PKNOX2Q96KN3 472 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 PAIP2Q9BPZ3 127 aaKnown RBP17.09■□□□□ 0.33
CLN3-239ENST00000628023 GATA5Q9BWX5 397 aaPredicted RBP17.09■□□□□ 0.33
CLN3-239ENST00000628023 ROGDIQ9GZN7 287 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 C3orf18Q9UK00 162 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 MAN2B2Q9Y2E5 1009 aa17.09■□□□□ 0.33
CLN3-239ENST00000628023 WDR91A4D1P6 747 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 FOXE1O00358 373 aaPredicted RBP17.08■□□□□ 0.32
CLN3-239ENST00000628023 CHST10O43529 356 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 RECKO95980 971 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 UMODP07911 640 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 CERS1P27544 350 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 ETV4P43268 484 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 SERPINB4P48594 390 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 AP5B1Q2VPB7 878 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 DEPDC1Q5TB30 811 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 AGBL2Q5U5Z8 902 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 NUDCD3Q8IVD9 361 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 RGMAQ96B86 450 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 CNDP1Q96KN2 507 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 SERINC2Q96SA4 455 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 SERPINI1Q99574 410 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 TBCDQ9BTW9 1192 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 TRMOQ9BU70 441 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 SHCBP1LQ9BZQ2 653 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 TGIF2Q9GZN2 237 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 ACBD3Q9H3P7 528 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 VIPAS39Q9H9C1 493 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 CLK4Q9HAZ1 481 aaKnown RBP17.08■□□□□ 0.32
CLN3-239ENST00000628023 SEMA3GQ9NS98 782 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 ZNF225Q9UK10 706 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 MKL2Q9ULH7 1088 aa17.08■□□□□ 0.32
CLN3-239ENST00000628023 TMEM120BA0PK00 339 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 AGPSO00116 658 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 RTCAO00442 366 aaKnown RBP17.07■□□□□ 0.32
CLN3-239ENST00000628023 MANBAO00462 879 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 PEX12O00623 359 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 CDC123O75794 336 aaPredicted RBP17.07■□□□□ 0.32
CLN3-239ENST00000628023 BMP10O95393 424 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 PDYNP01213 254 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 IGHEP01854 428 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 FURINP09958 794 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 RNH1P13489 461 aaKnown RBP17.07■□□□□ 0.32
CLN3-239ENST00000628023 JAK1P23458 1154 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 CASRP41180 1078 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 TCHHL1Q5QJ38 904 aaPredicted RBP17.07■□□□□ 0.32
CLN3-239ENST00000628023 HHATQ5VTY9 493 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 ZCCHC23Q6ZST2 131 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 MRGPREQ86SM8 312 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 MGARPQ8TDB4 240 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 THAP4Q8WY91 577 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 TBC1D20Q96BZ9 403 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 TLCD1Q96CP7 247 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 ABHD17AQ96GS6 310 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 OR1F2PQ96R84 312 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 KCNA7Q96RP8 456 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 HBEGFQ99075 208 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 MLXIPLQ9NP71 852 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 ZNF71Q9NQZ8 489 aaPredicted RBP17.07■□□□□ 0.32
CLN3-239ENST00000628023 FARSBQ9NSD9 589 aaKnown RBP17.07■□□□□ 0.32
CLN3-239ENST00000628023 NKIRAS1Q9NYS0 192 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 SLC12A4Q9UP95 1085 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 TIMM22Q9Y584 194 aa17.07■□□□□ 0.32
CLN3-239ENST00000628023 IDSB3KWA1 339 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 MKRN2OSH3BPM6 223 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 UBFD1O14562 309 aaKnown RBP17.06■□□□□ 0.32
CLN3-239ENST00000628023 NPHS1O60500 1241 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 ULK1O75385 1050 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 JRKO75564 520 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 FHP07954 510 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 IL10P22301 178 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 MMP11P24347 488 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 EMP2P54851 167 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 CUL3Q13618 768 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 ATP1A4Q13733 1029 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 RCN2Q14257 317 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 LACTB2Q53H82 288 aaPredicted RBP17.06■□□□□ 0.32
CLN3-239ENST00000628023 FAM219BQ5XKK7 198 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 FAAH2Q6GMR7 532 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 UBE3DQ7Z6J8 389 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 CUZD1Q86UP6 607 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 CA13Q8N1Q1 262 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 ADAMTS17Q8TE56 1095 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 ADAMTS18Q8TE60 1221 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 ARL8AQ96BM9 186 aa17.06■□□□□ 0.32
CLN3-239ENST00000628023 VPS50Q96JG6 964 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms