RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 BBS12Q6ZW61 710 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 SYCE1Q8N0S2 351 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 ZNF740Q8NDX6 193 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 ACTL9Q8TC94 416 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 THAP11Q96EK4 314 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 VMP1Q96GC9 406 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 PDLIM2Q96JY6 352 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 FERMT1Q9BQL6 677 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 RBM24Q9BX46 236 aaKnown RBP12.8□□□□□ -0.36
SNX1-214ENST00000625244 LRRC40Q9H9A6 602 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 PRDM9Q9NQV7 894 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 GALNT8Q9NY28 637 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 MYOTQ9UBF9 498 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 PPIEQ9UNP9 301 aaKnown RBP12.8□□□□□ -0.36
SNX1-214ENST00000625244 REXO2Q9Y3B8 237 aaKnown RBP12.8□□□□□ -0.36
SNX1-214ENST00000625244 ATG4BQ9Y4P1 393 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 TENM1Q9UKZ4 2725 aa12.8□□□□□ -0.36
SNX1-214ENST00000625244 MACROD2A1Z1Q3 448 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 DEFB108AA8MXU0 73 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 TLX2O43763 284 aaPredicted RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 STK10O94804 968 aaKnown RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 SIX3O95343 332 aaPredicted RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 CCL3P10147 92 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 CTSSP25774 331 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 PPARGP37231 505 aaPredicted RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 ADARP55265 1226 aaKnown RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 CCZ1BP86790 482 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 CCZ1P86791 482 aaPredicted RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 GBX1Q14549 363 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 HERC3Q15034 1050 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 TSTD2Q5T7W7 516 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 CAPN13Q6MZZ7 669 aaPredicted RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 DARS2Q6PI48 645 aaKnown RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 C20orf204Q6ZNR8 217 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 CDKL3Q8IVW4 592 aaPredicted RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 MEIOBQ8N635 442 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 NEIL3Q8TAT5 605 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 FAM136AQ96C01 138 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 CCDC77Q9BR77 488 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 ZNF703Q9H7S9 590 aaPredicted RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 SACM1LQ9NTJ5 587 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 ZFATQ9P243 1243 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 TFR2Q9UP52 801 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 SH2B3Q9UQQ2 575 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 TESMINQ9Y4I5 508 aa12.79□□□□□ -0.36
SNX1-214ENST00000625244 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.79□□□□□ -0.36
SNX1-214ENST00000625244 ZNF839A8K0R7 811 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PSTPIP1O43586 416 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 CD5LO43866 347 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 ZNF354AO60765 605 aaPredicted RBP12.78□□□□□ -0.36
SNX1-214ENST00000625244 ABCB7O75027 752 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 TP53P04637 393 aaPredicted RBP12.78□□□□□ -0.36
SNX1-214ENST00000625244 FAM157CP0CG43 387 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 RBP3P10745 1247 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PAX1P15863 534 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PPP2R1BP30154 601 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 OPRM1P35372 400 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PIGAP37287 484 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 TRPC1P48995 793 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 MARCKSL1P49006 195 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 EIF3EP60228 445 aaKnown RBP12.78□□□□□ -0.36
SNX1-214ENST00000625244 SRSF2Q01130 221 aaKnown RBP12.78□□□□□ -0.36
SNX1-214ENST00000625244 ACVR1Q04771 509 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PARP6Q2NL67 630 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 CTSL3PQ5NE16 218 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 NSUN5P2Q63ZY6 315 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 RNF10Q8N5U6 811 aaKnown RBP12.78□□□□□ -0.36
SNX1-214ENST00000625244 OR52K1Q8NGK4 314 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 HSPBAP1Q96EW2 488 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PIK3IP1Q96FE7 263 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PIGQQ9BRB3 760 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 LACRTQ9GZZ8 138 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 PNO1Q9NRX1 252 aaKnown RBP12.78□□□□□ -0.36
SNX1-214ENST00000625244 FAM114A2Q9NRY5 505 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 SAMD15Q9P1V8 674 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 GUCA1BQ9UMX6 200 aa12.78□□□□□ -0.36
SNX1-214ENST00000625244 ZSCAN12O43309 604 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 CTIFO43310 598 aaKnown RBP12.77□□□□□ -0.37
SNX1-214ENST00000625244 IL18BPO95998 194 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 P04436 131 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 SLC35G6P0C7Q6 338 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 ALOX12P18054 663 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 HRH2P25021 359 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 ATP5DP30049 168 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 CETN2P41208 172 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 TTPAP49638 278 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 PRAMEP78395 509 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 KCNJ11Q14654 390 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 TERF2Q15554 542 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 KLHL38Q2WGJ6 581 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 ACSBG2Q5FVE4 666 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 AARS2Q5JTZ9 985 aaKnown RBP12.77□□□□□ -0.37
SNX1-214ENST00000625244 RNF187Q5TA31 235 aaPredicted RBP12.77□□□□□ -0.37
SNX1-214ENST00000625244 CCDC181Q5TID7 509 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 HECTD2Q5U5R9 776 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 LUZP2Q86TE4 346 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 SPNS2Q8IVW8 549 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.77□□□□□ -0.37
SNX1-214ENST00000625244 KATNAL2Q8IYT4 538 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 RCOR2Q8IZ40 523 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms