RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 PRSS41Q7RTY9 318 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 SNX32Q86XE0 403 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 FUNDC1Q8IVP5 155 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 TMEM132CQ8N3T6 1108 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 SLC7A6OSQ96CW6 309 aaPredicted RBP16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 CMTM5Q96DZ9 223 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 SERINC2Q96SA4 455 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 TUBB6Q9BUF5 446 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 TMEM45AQ9NWC5 275 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 SIDT1Q9NXL6 827 aaKnown RBP16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 NAALAD2Q9Y3Q0 740 aa16.9■□□□□ 0.3
PTCHD3-202ENST00000622555 FAM234BA2RU67 622 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 ZNF860A6NHJ4 632 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 EFCAB7A8K855 629 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 GALR3O60755 368 aaPredicted RBP16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 HNRNPCL1O60812 293 aaKnown RBP16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 MED26O95402 600 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 IL3P08700 152 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 COX4I1P13073 169 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 PRPS1L1P21108 318 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 PRDX6P30041 224 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 CCKBRP32239 447 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 POLR2JP52435 117 aaKnown RBP16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 KCNK10P57789 538 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 C2orf80Q0P641 193 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 CYLC2Q14093 348 aaPredicted RBP16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 MUM1Q2TAK8 710 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 TLDC1Q6P9B6 456 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 DHRS13Q6UX07 377 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 PDSS2Q86YH6 399 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 NETO1Q8TDF5 533 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 NUDT8Q8WV74 236 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 TM4SF18Q96CE8 201 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 ENAMQ9NRM1 1142 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 OCIAD1Q9NX40 245 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 TAGLN3Q9UI15 199 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 RARRES3Q9UL19 164 aa16.89■□□□□ 0.29
PTCHD3-202ENST00000622555 HYAL3O43820 417 aaPredicted RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 PRMT3O60678 531 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 SNRPB2P08579 225 aaKnown RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 HPCAL1P37235 193 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 GSTM5P46439 218 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 EMP3P54852 163 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 CLDN6P56747 220 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 TRA2BP62995 288 aaKnown RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 RIPK1Q13546 671 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 FAM214AQ32MH5 1076 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 FAM71E1Q6IPT2 247 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 BLOC1S3Q6QNY0 202 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 IKBIPQ70UQ0 350 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 SLCO6A1Q86UG4 719 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 RIMKLAQ8IXN7 391 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 GLB1L3Q8NCI6 653 aaPredicted RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 OR9A4Q8NGU2 314 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 RP9Q8TA86 221 aaKnown RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 NSL1Q96IY1 281 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 NDC1Q9BTX1 674 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 CLMPQ9H6B4 373 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 CUTCQ9NTM9 273 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 LYARQ9NX58 379 aaKnown RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 AKAP7Q9P0M2 348 aaPredicted RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 FBXW2Q9UKT8 454 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 WBP11Q9Y2W2 641 aaKnown RBP16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 SCN2AQ99250 2005 aa16.88■□□□□ 0.29
PTCHD3-202ENST00000622555 A0A0A6YYC8 382 aaPredicted RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 SPAARA0A1B0GVQ0 90 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 I3L1I5 382 aaPredicted RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 SGK494L7N484 410 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 GFRA3O60609 400 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 GUCY1B2O75343 617 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 ESRRAP11474 423 aaPredicted RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 CDK4P11802 303 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 COX7A2P14406 83 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 CSRP1P21291 193 aaKnown RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 ZFP36L2P47974 494 aaKnown RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 SKP1P63208 163 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 OLR1P78380 273 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 KLC1Q07866 573 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 FAM53BQ14153 422 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 RCAN2Q14206 197 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 PRAMEF17Q5VTA0 474 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 CDCP2Q5VXM1 449 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 MRM1Q6IN84 353 aaKnown RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 DTWD1Q8N5C7 304 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 EFCAB3Q8N7B9 438 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 STARD8Q92502 1023 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 SLC25A23Q9BV35 468 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 STRADBQ9C0K7 418 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 TEX10Q9NXF1 929 aaPredicted RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 MAPRE3Q9UPY8 281 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 ASB4Q9Y574 426 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 PTPRZ1P23471 2315 aaPredicted RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 TMX2-CTNND1H3BSU7 103 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 SCAMP2O15127 329 aaKnown RBP16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 ZNF749O43361 778 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 FOXS1O43638 330 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 RDH16O75452 317 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 MT-CO3P00414 261 aa16.87■□□□□ 0.29
PTCHD3-202ENST00000622555 CPA2P48052 419 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms