RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ZNF793Q6ZN11 406 aa18.28■□□□□ 0.52
UPF1-209ENST00000600310 SHISA5Q8N114 240 aa18.28■□□□□ 0.52
UPF1-209ENST00000600310 GBP7Q8N8V2 638 aaPredicted RBP18.28■□□□□ 0.52
UPF1-209ENST00000600310 ACOT4Q8N9L9 421 aa18.28■□□□□ 0.52
UPF1-209ENST00000600310 SNRNP27Q8WVK2 155 aaKnown RBP18.28■□□□□ 0.52
UPF1-209ENST00000600310 HBEGFQ99075 208 aa18.28■□□□□ 0.52
UPF1-209ENST00000600310 SOX17Q9H6I2 414 aaPredicted RBP18.28■□□□□ 0.52
UPF1-209ENST00000600310 COPS7BQ9H9Q2 264 aaPredicted RBP18.28■□□□□ 0.52
UPF1-209ENST00000600310 CPNE5Q9HCH3 593 aa18.28■□□□□ 0.52
UPF1-209ENST00000600310 NMRK1Q9NWW6 199 aa18.28■□□□□ 0.52
UPF1-209ENST00000600310 SLC12A4Q9UP95 1085 aa18.28■□□□□ 0.52
UPF1-209ENST00000600310 ITM2AO43736 263 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 SNUPNO95149 360 aaKnown RBP18.27■□□□□ 0.52
UPF1-209ENST00000600310 UMODP07911 640 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 CERS1P27544 350 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 ABCE1P61221 599 aaKnown RBP18.27■□□□□ 0.52
UPF1-209ENST00000600310 KLC1Q07866 573 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 STX3Q13277 289 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 ABRAXAS2Q15018 415 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 UGT8Q16880 541 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 CLEC6AQ6EIG7 209 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 TMEM151BQ8IW70 566 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 CLYBLQ8N0X4 340 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 CA13Q8N1Q1 262 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 ZCCHC7Q8N3Z6 543 aaKnown RBP18.27■□□□□ 0.52
UPF1-209ENST00000600310 TBC1D20Q96BZ9 403 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 PEX11GQ96HA9 241 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 OR1F2PQ96R84 312 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 SORBS1Q9BX66 1292 aaKnown RBP18.27■□□□□ 0.52
UPF1-209ENST00000600310 ZNF717Q9BY31 904 aaPredicted RBP18.27■□□□□ 0.52
UPF1-209ENST00000600310 ACPTQ9BZG2 426 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 DDX31Q9H8H2 851 aaKnown RBP18.27■□□□□ 0.52
UPF1-209ENST00000600310 AHSPQ9NZD4 102 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 TRAF6Q9Y4K3 522 aa18.27■□□□□ 0.52
UPF1-209ENST00000600310 HSPA4LO95757 839 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 RNH1P13489 461 aaKnown RBP18.26■□□□□ 0.51
UPF1-209ENST00000600310 CHN1P15882 459 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 BSGP35613 385 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 SSR2P43308 183 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 PPP2R2AP63151 447 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 IL10RAQ13651 578 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 ERV3-1Q14264 604 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 KANK2Q63ZY3 851 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 SCIMPQ6UWF3 145 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 RNF165Q6ZSG1 346 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 SHISA6Q6ZSJ9 500 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 MED25Q71SY5 747 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 TRIM46Q7Z4K8 759 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 LAPTM4BQ86VI4 370 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 TRIM42Q8IWZ5 723 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 PRSS58Q8IYP2 241 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 METTL4Q8N3J2 472 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 ADAMTS17Q8TE56 1095 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 LYRM4Q9HD34 91 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 VPS29Q9UBQ0 182 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 DAPP1Q9UN19 280 aa18.26■□□□□ 0.51
UPF1-209ENST00000600310 JRKO75564 520 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 LYPLA1O75608 230 aaPredicted RBP18.25■□□□□ 0.51
UPF1-209ENST00000600310 SLC1A6P48664 564 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 LIM2P55344 173 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 RAB38P57729 211 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 BST1Q10588 318 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 TBL3Q12788 808 aaKnown RBP18.25■□□□□ 0.51
UPF1-209ENST00000600310 CDC20Q12834 499 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 UGT3A2Q3SY77 523 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 TUBB8Q3ZCM7 444 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 SH2D4BQ5SQS7 431 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 RAB3IL1Q8TBN0 382 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 ADAMTS18Q8TE60 1221 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 NACC2Q96BF6 587 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 CRB3Q9BUF7 120 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 MRPL1Q9BYD6 325 aaKnown RBP18.25■□□□□ 0.51
UPF1-209ENST00000600310 C20orf27Q9GZN8 174 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 ZNF395Q9H8N7 513 aaPredicted RBP18.25■□□□□ 0.51
UPF1-209ENST00000600310 LANCL2Q9NS86 450 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 SEMA3GQ9NS98 782 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 KCMF1Q9P0J7 381 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 ZDHHC2Q9UIJ5 367 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 C3orf18Q9UK00 162 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 ADAM29Q9UKF5 820 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.25■□□□□ 0.51
UPF1-209ENST00000600310 DNAJC15Q9Y5T4 150 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 FREM2Q5SZK8 3169 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 SCN3AQ9NY46 2000 aa18.25■□□□□ 0.51
UPF1-209ENST00000600310 A0A0A6YYD5 115 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 IDSB3KWA1 339 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 PSMD12O00232 456 aaPredicted RBP18.24■□□□□ 0.51
UPF1-209ENST00000600310 DYNC1I1O14576 645 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 EEDO75530 441 aaKnown RBP18.24■□□□□ 0.51
UPF1-209ENST00000600310 CHEK2O96017 543 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 IGHEP01854 428 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 FHP07954 510 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 CYC1P08574 325 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 PRKAR1AP10644 381 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 MMP11P24347 488 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 EMP2P54851 167 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 CXADRP78310 365 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 HMGCS1Q01581 520 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 SLAMF1Q13291 335 aa18.24■□□□□ 0.51
UPF1-209ENST00000600310 NUDT13Q86X67 352 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms