RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TDHQ8IZJ6 230 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 FRMD1Q8N878 549 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 TMEM145Q8NBT3 493 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 C11orf65Q8NCR3 313 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 FLCNQ8NFG4 579 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 OR52N2Q8NGI0 321 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 NFKBIDQ8NI38 313 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 DGCR14Q96DF8 476 aaKnown RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 MTERF3Q96E29 417 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 C7orf34Q96L11 122 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 RBM4BQ9BQ04 359 aaKnown RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 C17orf62Q9BQA9 187 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 RBM4Q9BWF3 364 aaKnown RBP13.79□□□□□ -0.2
VRK3-217ENST00000599538 USE1Q9NZ43 259 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 AHSPQ9NZD4 102 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 SNX8Q9Y5X2 465 aa13.79□□□□□ -0.2
VRK3-217ENST00000599538 DRD1P21728 446 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 RPL3P39023 403 aaKnown RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 RPS26P62854 115 aaKnown RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 HYAL2Q12891 473 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 USP30Q70CQ3 517 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 GALNT5Q7Z7M9 940 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 SGCDQ92629 289 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 DPH7Q9BTV6 452 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 TMEM168Q9H0V1 697 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 NT5DC2Q9H857 520 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 FBRSQ9HAH7 460 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 SLC24A3Q9HC58 644 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 MRPS30Q9NP92 439 aaKnown RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 EXD2Q9NVH0 621 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 CORO2BQ9UQ03 480 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 NCKAP1Q9Y2A7 1128 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 PCDHGA8Q9Y5G5 932 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 CCDC88CQ9P219 2028 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 TCRBV21S2A2A0A5A6 115 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 LRIT2A6NDA9 550 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 CCDC160A6NGH7 325 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 PRAMEF25A6NGN4 478 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 B4GALT2O60909 372 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 GABRG2P18507 467 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 CHI3L1P36222 383 aaPredicted RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 SNRPNP63162 240 aaKnown RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 EEF1A2Q05639 463 aaKnown RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 LRRC74AQ0VAA2 488 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 MYBPC3Q14896 1274 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 KIAA1614Q5VZ46 1190 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 SHQ1Q6PI26 577 aaKnown RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 SLC30A9Q6PML9 568 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 RAB42Q8N4Z0 105 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 ARL10Q8N8L6 244 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 OR2L3Q8NG85 312 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 OR4E2Q8NGC2 313 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 EXOSC8Q96B26 276 aaKnown RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 EPS8L2Q9H6S3 715 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 MVB12BQ9H7P6 319 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 ZNF624Q9P2J8 865 aaPredicted RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 EBF1Q9UH73 591 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 SCML1Q9UN30 329 aa13.78□□□□□ -0.2
VRK3-217ENST00000599538 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.78□□□□□ -0.2
VRK3-217ENST00000599538 TRIM64CA6NLI5 447 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 IL7RP16871 459 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 PTGER1P34995 402 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 DAPP51397 102 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 MRPS21P82921 87 aaKnown RBP13.77□□□□□ -0.21
VRK3-217ENST00000599538 SCARB2Q14108 478 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 NFATC4Q14934 902 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 GCNT6Q5T4J0 391 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 ZC3H7AQ8IWR0 971 aaKnown RBP13.77□□□□□ -0.21
VRK3-217ENST00000599538 NCSTNQ92542 709 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 RGMAQ96B86 450 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 TAMM41Q96BW9 452 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 FCRL4Q96PJ5 515 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 SPATA9Q9BWV2 254 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 TM9SF3Q9HD45 589 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 CEPT1Q9Y6K0 416 aa13.77□□□□□ -0.21
VRK3-217ENST00000599538 TRBC2A0A5B9 178 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 CCDC85CA6NKD9 419 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 SUV39H1O43463 412 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 FUT4P22083 530 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 OR1E2P47887 323 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 KIAA1024LP59773 190 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 TUBA4AP68366 448 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 HSPB3Q12988 150 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 LRRC32Q14392 662 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 CTU2Q2VPK5 515 aaKnown RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 OR4C11Q6IEV9 310 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 LAIR2Q6ISS4 152 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 PAGE2Q7Z2X7 111 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 DGLUCYQ7Z3D6 616 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 NUDT13Q86X67 352 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 HIPK1Q86Z02 1210 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 HMGB4Q8WW32 186 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 NECTIN4Q96NY8 510 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 DDX31Q9H8H2 851 aaKnown RBP13.76□□□□□ -0.21
VRK3-217ENST00000599538 TMEM184CQ9NVA4 438 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 NDUFA13Q9P0J0 144 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 SCN3AQ9NY46 2000 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 FANCMQ8IYD8 2048 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 A0A0A6YYD5 115 aa13.76□□□□□ -0.21
VRK3-217ENST00000599538 GLOD5A6NK44 160 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms