RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 IRF9Q00978 393 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 SLC13A2Q13183 592 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 ADPRMQ3LIE5 342 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 FCRLBQ6BAA4 426 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 ABHD17CQ6PCB6 329 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 ZNF595Q8IYB9 648 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 CENPLQ8N0S6 344 aaPredicted RBP11.61□□□□□ -0.55
SS18-225ENST00000585121 TEX9Q8N6V9 391 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 HORMAD2Q8N7B1 307 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 SLC44A1Q8WWI5 657 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 KCNC2Q96PR1 638 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 CENPKQ9BS16 269 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 VPS11Q9H270 941 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 PRTFDC1Q9NRG1 225 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 TNPO3Q9Y5L0 923 aaKnown RBP11.61□□□□□ -0.55
SS18-225ENST00000585121 SPACA6W5XKT8 324 aa11.61□□□□□ -0.55
SS18-225ENST00000585121 USP9YO00507 2555 aaPredicted RBP11.61□□□□□ -0.55
SS18-225ENST00000585121 TCRBV16S1A1N1A0A5B0 115 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 SAGE2PA6NJ88 616 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 A8MUA0 341 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 C4orf51C9J302 202 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CDK2AP1O14519 115 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CTIFO43310 598 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 PRAMEF4O60810 478 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 GP1BBP13224 206 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CNTFP26441 200 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PIK3CGP48736 1102 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 ALDH18A1P54886 795 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 HSD17B7P56937 341 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PHEXP78562 749 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 OC90Q02509 493 aaPredicted RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 RUNX2Q13950 521 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PFKFB4Q16877 469 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 TMEM35AQ53FP2 167 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 ZNF766Q5HY98 468 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PRAMEF9Q5VWM5 478 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 VN1R5Q7Z5H4 357 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 MYLK4Q86YV6 388 aaPredicted RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 CRLF3Q8IUI8 442 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 IFT20Q8IY31 132 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 LGI4Q8N135 537 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 BEST3Q8N1M1 668 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 DNAJB8Q8NHS0 232 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 ELP5Q8TE02 316 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 REPS1Q96D71 796 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CMTM7Q96FZ5 175 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 C5orf34Q96MH7 638 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 F2RL3Q96RI0 385 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 TBCDQ9BTW9 1192 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 FUT8Q9BYC5 575 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 DEFB126Q9BYW3 111 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 AICDAQ9GZX7 198 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CDCP1Q9H5V8 836 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 NECTIN3Q9NQS3 549 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PNO1Q9NRX1 252 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 SLC5A6Q9Y289 635 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 SPTAN1Q13813 2472 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 SPTBN1Q01082 2364 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 A0A087WUV0 522 aaPredicted RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 IGKV3D-11A0A0A0MRZ8 115 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 HMX2A2RU54 273 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 GABRR3A8MPY1 467 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 POC1B-GALNT4F8VUJ3 575 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 SEMA7AO75326 666 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 ALDOAP04075 364 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 RBP1P09455 135 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CD46P15529 392 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 EPORP19235 508 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CD22P20273 847 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CERS1P27544 350 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 LIM2P55344 173 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PCDH1Q08174 1060 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 TUBA3CQ13748 450 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 NAA30Q147X3 362 aaPredicted RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 SETDB1Q15047 1291 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 TSNAXIP1Q2TAA8 658 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 AP5B1Q2VPB7 878 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 LGSNQ5TDP6 509 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 LIPJQ5W064 366 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 GRHL2Q6ISB3 625 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 TUBA3EQ6PEY2 450 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 RPS19BP1Q86WX3 136 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 LAS2Q8IYD9 372 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 FAM47BQ8NA70 645 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 C7orf57Q8NEG2 295 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 ZNF473Q8WTR7 871 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 SCYL1Q96KG9 808 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 QRFPRQ96P65 431 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PSMG3-AS1Q96PY0 264 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PAFAH2Q99487 392 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CCDC77Q9BR77 488 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 ACTR8Q9H981 624 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 CPSF2Q9P2I0 782 aaKnown RBP11.6□□□□□ -0.55
SS18-225ENST00000585121 TMCO1Q9UM00 188 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 ASB1Q9Y576 335 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PCDHGB6Q9Y5F9 930 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 PCDHGA11Q9Y5H2 935 aa11.6□□□□□ -0.55
SS18-225ENST00000585121 FCHO1O14526 889 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 SMIM24O75264 130 aa11.59□□□□□ -0.55
SS18-225ENST00000585121 MYO1DO94832 1006 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms