RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 AP4S1Q9Y587 144 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 USP34Q70CQ2 3546 aa7.6□□□□□ -1.19
VPS39-213ENST00000570062 CFAP54Q96N23 3096 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 A0A1W2PRB8 838 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 TCRBV3S1A0A5B6 114 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ELOVL7A1L3X0 281 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ASPDHA6ND91 283 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 SYNDIG1LA6NDD5 238 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 RHPN2P1A8MT19 583 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 A8MUI8 341 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 FAM220BPB1ANY3 271 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 CLIC1O00299 241 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 BTN3A3O00478 584 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 NME4O00746 187 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 PLPP1O14494 284 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 SCAMP1O15126 338 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 YY2O15391 372 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 NUDT21O43809 227 aaKnown RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 UBXN7O94888 489 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 SLITRK5O94991 958 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 BMP10O95393 424 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ETHE1O95571 254 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 BAG2O95816 211 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 IFNA14P01570 189 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 RETP07949 1114 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 PNLIPP16233 465 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 UGT2B7P16662 529 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 GPX2P18283 190 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 HIST1H1TP22492 207 aaPredicted RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 TACR1P25103 407 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 GPC1P35052 558 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 BSGP35613 385 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 SSR2P43308 183 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 GSK3BP49841 420 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 TAS2R50P59544 299 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 GPLD1P80108 840 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 CYP4F3Q08477 520 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 RBBP4Q09028 425 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 FADDQ13158 208 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 BIKQ13323 160 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 CCNIQ14094 377 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ELOAQ14241 798 aaKnown RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 CLPPQ16740 277 aaPredicted RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 NDUFA9Q16795 377 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 UGT8Q16880 541 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 HKDC1Q2TB90 917 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ZNF528Q3MIS6 628 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 C14orf28Q4W4Y0 310 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 INTS11Q5TA45 600 aaKnown RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 KIAA1614Q5VZ46 1190 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ABHD17CQ6PCB6 329 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ZNF621Q6ZSS3 439 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 VN1R5Q7Z5H4 357 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 C1orf210Q8IVY1 113 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 TMEFF1Q8IYR6 380 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 KIAA2013Q8IYS2 634 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ARL14Q8N4G2 192 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 KRTCAP2Q8N6L1 136 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 METTL25Q8N6Q8 603 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ZNF740Q8NDX6 193 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ADCY4Q8NFM4 1077 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 ADAMTS18Q8TE60 1221 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 MS4A6EQ96DS6 147 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 TM4SF19Q96DZ7 209 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 FAM120BQ96EK7 910 aaKnown RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 REXO5Q96IC2 774 aaKnown RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 SLC45A3Q96JT2 553 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 NSMCE2Q96MF7 247 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 PPM1MQ96MI6 270 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 RNF145Q96MT1 663 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 F2RL3Q96RI0 385 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 SERINC2Q96SA4 455 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 DPYSL5Q9BPU6 564 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 EBPLQ9BY08 206 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 PAIP1Q9H074 479 aaKnown RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 ZMYND15Q9H091 742 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 KAT8Q9H7Z6 458 aaKnown RBP7.59□□□□□ -1.19
VPS39-213ENST00000570062 SLC6A20Q9NP91 592 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 C2orf42Q9NWW7 574 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 CMTM6Q9NX76 183 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 TAS2R9Q9NYW1 312 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 SH2B3Q9UQQ2 575 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 WDFY4Q6ZS81 3184 aa7.59□□□□□ -1.19
VPS39-213ENST00000570062 XIRP2A4UGR9 3374 aa7.59□□□□□ -1.2
VPS39-213ENST00000570062 ZDBF2Q9HCK1 2354 aa7.59□□□□□ -1.2
VPS39-213ENST00000570062 TRBV23OR9-2A0A075B6M9 112 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 TRBV5-3A0A0A0MS03 114 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 A0A0A6YYD5 115 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 IGKV1-8A0A0C4DH67 115 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 FEZF1A0PJY2 475 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 TMEM247A6NEH6 219 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 FAM86C2PA6NEL3 165 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 B4DGG1 531 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 H0YJX3 145 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 HAT1O14929 419 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 AKAP10O43572 662 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 LCMT2O60294 686 aaKnown RBP7.58□□□□□ -1.2
VPS39-213ENST00000570062 SCN2BO60939 215 aa7.58□□□□□ -1.2
VPS39-213ENST00000570062 PIAS2O75928 621 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms