RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CD63P08962 238 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 BSGP35613 385 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 EMP2P54851 167 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 ABRAXAS2Q15018 415 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 ARL13AQ5H913 290 aaPredicted RBP18.44■□□□□ 0.54
CLN3-225ENST00000566824 CLEC6AQ6EIG7 209 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 OR4C11Q6IEV9 310 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 PCSK4Q6UW60 755 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 NUDCD3Q8IVD9 361 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 ACOT4Q8N9L9 421 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 TTC9Q92623 222 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 RGMAQ96B86 450 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 KCNC2Q96PR1 638 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 SERINC2Q96SA4 455 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 CSF3RQ99062 836 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 SH3GL2Q99962 352 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 TBCDQ9BTW9 1192 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 MRPL1Q9BYD6 325 aaKnown RBP18.44■□□□□ 0.54
CLN3-225ENST00000566824 STMN4Q9H169 189 aaPredicted RBP18.44■□□□□ 0.54
CLN3-225ENST00000566824 VIPAS39Q9H9C1 493 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 C14orf105Q9NVL8 296 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 PSD3Q9NYI0 1048 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 KCMF1Q9P0J7 381 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 RALYQ9UKM9 306 aaKnown RBP18.44■□□□□ 0.54
CLN3-225ENST00000566824 SNX6Q9UNH7 406 aa18.44■□□□□ 0.54
CLN3-225ENST00000566824 DOCK10Q96BY6 2186 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 ARGFXA6NJG6 315 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 TMEM233B4DJY2 109 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 B3GALT2O43825 422 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 NPHS1O60500 1241 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 B4GALT2O60909 372 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 ZWINTO95229 277 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 GBAP04062 536 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 ENO1P06733 434 aaKnown RBP18.43■□□□□ 0.54
CLN3-225ENST00000566824 HEXBP07686 556 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 HIST1H1TP22492 207 aaPredicted RBP18.43■□□□□ 0.54
CLN3-225ENST00000566824 MMP11P24347 488 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 HMOX2P30519 316 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 SSR2P43308 183 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 MTTPP55157 894 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 LIM2P55344 173 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 BTG2P78543 158 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 RHAGQ02094 409 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 CUL3Q13618 768 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 MINDY4Q4G0A6 757 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 MFSD4BQ5TF39 518 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 KIRREL2Q6UWL6 708 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 LANCL3Q6ZV70 420 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 MGARPQ8TDB4 240 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 TSLPQ969D9 159 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 TBC1D20Q96BZ9 403 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 CNDP1Q96KN2 507 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 MAGEB10Q96LZ2 347 aaPredicted RBP18.43■□□□□ 0.54
CLN3-225ENST00000566824 MAPKAP1Q9BPZ7 522 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 TRIM55Q9BYV6 548 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 PPT2Q9UMR5 302 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 POLHQ9Y253 713 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 STK38LQ9Y2H1 464 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 PTGDR2Q9Y5Y4 395 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 KCNMB2Q9Y691 235 aa18.43■□□□□ 0.54
CLN3-225ENST00000566824 ITM2AO43736 263 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 TMPRSS11DO60235 418 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 LYPLA1O75608 230 aaPredicted RBP18.42■□□□□ 0.54
CLN3-225ENST00000566824 DNAJB5O75953 348 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 SCELO95171 688 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 FHP07954 510 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 RNH1P13489 461 aaKnown RBP18.42■□□□□ 0.54
CLN3-225ENST00000566824 RAP1GDS1P52306 607 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 PHEXP78562 749 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 TBL3Q12788 808 aaKnown RBP18.42■□□□□ 0.54
CLN3-225ENST00000566824 RCN2Q14257 317 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 AP5B1Q2VPB7 878 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 CUZD1Q86UP6 607 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 RAB43Q86YS6 212 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 FAM47BQ8NA70 645 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 ATP6V1G3Q96LB4 118 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 SERPINI1Q99574 410 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 NPLQ9BXD5 320 aaPredicted RBP18.42■□□□□ 0.54
CLN3-225ENST00000566824 ACPTQ9BZG2 426 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 COPS7BQ9H9Q2 264 aaPredicted RBP18.42■□□□□ 0.54
CLN3-225ENST00000566824 SEMA3GQ9NS98 782 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 P4HTMQ9NXG6 502 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 DAPP1Q9UN19 280 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 SLC12A4Q9UP95 1085 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 MAN2B2Q9Y2E5 1009 aa18.42■□□□□ 0.54
CLN3-225ENST00000566824 TGFBR3LH3BV60 316 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 CYR61O00622 381 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 KRT6AP02538 564 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 KRT6BP04259 564 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 BGNP21810 368 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 KRT6CP48668 564 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 RAB38P57729 211 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 NAA20P61599 178 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 HMGCS1Q01581 520 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 TGM3Q08188 693 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 ASPHQ12797 758 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 SLAMF1Q13291 335 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 CHI3L2Q15782 390 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 NIPAL1Q6NVV3 410 aa18.41■□□□□ 0.54
CLN3-225ENST00000566824 OR11G2Q8NGC1 345 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms