RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 IRAK4Q9NWZ3 460 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 NDE1Q9NXR1 346 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 WBP11Q9Y2W2 641 aaKnown RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 OTOGLQ3ZCN5 2332 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 TOX3O15405 576 aaPredicted RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 FURINP09958 794 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 PIM1P11309 404 aaPredicted RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 COL9A2Q14055 689 aaPredicted RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 CSRP2Q16527 193 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 PRTGQ2VWP7 1150 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 OR4F3Q6IEY1 312 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 R3HCC1LQ7Z5L2 792 aaKnown RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 NAXDQ8IW45 347 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 MMP21Q8N119 569 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 ROPN1LQ96C74 230 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 ZNF285Q96NJ3 590 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 PRPF18Q99633 342 aaKnown RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 WDR41Q9HAD4 459 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 IL1RL2Q9HB29 575 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 TEX10Q9NXF1 929 aaPredicted RBP29.02■■■□□ 2.24
CTCF-203ENST00000566078 ATP6V1HQ9UI12 483 aa29.02■■■□□ 2.24
CTCF-203ENST00000566078 A0A088AWK7 358 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 GABRR3A8MPY1 467 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 GSC2O15499 205 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 LMNAP02545 664 aaKnown RBP29.01■■■□□ 2.23
CTCF-203ENST00000566078 NELFEP18615 380 aaKnown RBP29.01■■■□□ 2.23
CTCF-203ENST00000566078 ZNF10P21506 573 aaPredicted RBP29.01■■■□□ 2.23
CTCF-203ENST00000566078 ACP1P24666 158 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 PHC1P78364 1004 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 NFYCQ13952 458 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 CPTPQ5TA50 214 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 HACD2Q6Y1H2 254 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 GPR180Q86V85 440 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 MCUR1Q96AQ8 359 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 GFM1Q96RP9 751 aaKnown RBP29.01■■■□□ 2.23
CTCF-203ENST00000566078 IRF2BPLQ9H1B7 796 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 PARD6AQ9NPB6 346 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 MIEF1Q9NQG6 463 aa29.01■■■□□ 2.23
CTCF-203ENST00000566078 COL27A1Q8IZC6 1860 aaPredicted RBP29■■■□□ 2.23
CTCF-203ENST00000566078 NBL1P41271 181 aa29■■■□□ 2.23
CTCF-203ENST00000566078 PDE7AQ13946 482 aa29■■■□□ 2.23
CTCF-203ENST00000566078 GPR19Q15760 415 aa29■■■□□ 2.23
CTCF-203ENST00000566078 MAPKAPK3Q16644 382 aa29■■■□□ 2.23
CTCF-203ENST00000566078 TCTE1Q5JU00 501 aa29■■■□□ 2.23
CTCF-203ENST00000566078 TMTC4Q5T4D3 741 aa29■■■□□ 2.23
CTCF-203ENST00000566078 MRM1Q6IN84 353 aaKnown RBP29■■■□□ 2.23
CTCF-203ENST00000566078 CAMKMTQ7Z624 323 aa29■■■□□ 2.23
CTCF-203ENST00000566078 SERINC2Q96SA4 455 aa29■■■□□ 2.23
CTCF-203ENST00000566078 DUSP26Q9BV47 211 aa29■■■□□ 2.23
CTCF-203ENST00000566078 LYARQ9NX58 379 aaKnown RBP29■■■□□ 2.23
CTCF-203ENST00000566078 FBXW2Q9UKT8 454 aa29■■■□□ 2.23
CTCF-203ENST00000566078 RRP15Q9Y3B9 282 aaKnown RBP29■■■□□ 2.23
CTCF-203ENST00000566078 NUP214P35658 2090 aaPredicted RBP28.99■■■□□ 2.23
CTCF-203ENST00000566078 IGHV5-10-1A0A0J9YXX1 117 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 CFAP73A6NFT4 308 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 LRP3O75074 770 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 ANKRD34CP0C6C1 535 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 LAMP1P11279 417 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 NQO1P15559 274 aaKnown RBP28.99■■■□□ 2.23
CTCF-203ENST00000566078 IL1RNP18510 177 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 PLIN5Q00G26 463 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 HEPACAMQ14CZ8 416 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 CLPPQ16740 277 aaPredicted RBP28.99■■■□□ 2.23
CTCF-203ENST00000566078 PRSS41Q7RTY9 318 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 PGAM4Q8N0Y7 254 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 OR8J2Q8NGG1 315 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 PPCDCQ96CD2 204 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 MTERF3Q96E29 417 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 CCDC74BQ96LY2 380 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 GID8Q9NWU2 228 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 SH3BP4Q9P0V3 963 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 PDP2Q9P2J9 529 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 ASB4Q9Y574 426 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 SLC22A7Q9Y694 548 aa28.99■■■□□ 2.23
CTCF-203ENST00000566078 TMEM150CB9EJG8 249 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 GP1BAP07359 652 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 DDCP20711 480 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 ALDH9A1P49189 494 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 TRMT5Q32P41 509 aaKnown RBP28.98■■■□□ 2.23
CTCF-203ENST00000566078 AASDHQ4L235 1098 aaPredicted RBP28.98■■■□□ 2.23
CTCF-203ENST00000566078 ZNF385BQ569K4 471 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 MSANTD1Q6ZTZ1 278 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 DHDDSQ86SQ9 333 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 ARHGEF39Q8N4T4 335 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 DPP10Q8N608 796 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 EFCAB3Q8N7B9 438 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 RMND5AQ9H871 391 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 CROTQ9UKG9 612 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 B3GALT2O43825 422 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 PGM1P36871 562 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 ANKRD46Q86W74 232 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 TICAM1Q8IUC6 712 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 COQ8BQ96D53 544 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 SLC39A3Q9BRY0 314 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 THTPAQ9BU02 230 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 FAIM2Q9BWQ8 316 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 SPRTNQ9H040 489 aaPredicted RBP28.98■■■□□ 2.23
CTCF-203ENST00000566078 ATAD3AQ9NVI7 634 aa28.98■■■□□ 2.23
CTCF-203ENST00000566078 FAM120CQ9NX05 1096 aaKnown RBP28.98■■■□□ 2.23
CTCF-203ENST00000566078 NAALAD2Q9Y3Q0 740 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms