RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NEIL2Q969S2 332 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CRELD1Q96HD1 420 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 TRNT1Q96Q11 434 aaKnown RBP12.65□□□□□ -0.38
CLN3-210ENST00000563874 OR2A14Q96R47 310 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 ASPNQ9BXN1 380 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 BARHL1Q9BZE3 327 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 SNTG1Q9NSN8 517 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 DNAJC27Q9NZQ0 273 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 CFAP97Q9P2B7 532 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 HCN4Q9Y3Q4 1203 aa12.65□□□□□ -0.38
CLN3-210ENST00000563874 TSPAN6O43657 245 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 SGTAO43765 313 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 ENTPD6O75354 484 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TGFB1P01137 390 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 GJA1P17302 382 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TIA1P31483 386 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLN3-210ENST00000563874 CHI3L1P36222 383 aaPredicted RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 RACK1P63244 317 aaKnown RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 EIF4HQ15056 248 aaKnown RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 POM121L1PQ3SYA9 428 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 GRHL2Q6ISB3 625 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 Q6ZNB5 142 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 WDR53Q7Z5U6 358 aaPredicted RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 LAX1Q8IWV1 398 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TAGAPQ8N103 731 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 MMP21Q8N119 569 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 CHTF18Q8WVB6 975 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 COQ8BQ96D53 544 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TRMT61AQ96FX7 289 aaKnown RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 PIP5K1AQ99755 562 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 OR51B5Q9H339 312 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TIGARQ9NQ88 270 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 CCDC88CQ9P219 2028 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TRBC2A0A5B9 178 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 SERTM1A2A2V5 107 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 EFCAB10A6NFE3 127 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 H0YIV9 168 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 CA12O43570 354 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 KRT75O95678 551 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 ETV3P41162 512 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 RPS26P62854 115 aaKnown RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 MRPS15P82914 257 aaKnown RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 STARD3Q14849 445 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 BAK1Q16611 211 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 DUSP7Q16829 419 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 MPEG1Q2M385 716 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 UAP1L1Q3KQV9 507 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 SYTL3Q4VX76 610 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TMC5Q6UXY8 1006 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 Q6ZVU0 165 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 SLC34A3Q8N130 599 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 TP53INP1Q96A56 240 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 OPALINQ96PE5 141 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 SPATA9Q9BWV2 254 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 NMNAT1Q9HAN9 279 aaPredicted RBP12.64□□□□□ -0.39
CLN3-210ENST00000563874 SMURF1Q9HCE7 757 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 SH2B3Q9UQQ2 575 aa12.64□□□□□ -0.39
CLN3-210ENST00000563874 SMIM30A4D0T7 59 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 RNASET2O00584 256 aaKnown RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 SELPP16109 830 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 PDHA2P29803 388 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 CTSCP53634 463 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 LRRC74AQ0VAA2 488 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 KRR1Q13601 381 aaKnown RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 ARMC4Q5T2S8 1044 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 PLAG1Q6DJT9 500 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 THOC7Q6I9Y2 204 aaKnown RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 C22orf39Q6P5X5 142 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 HSD11B1LQ7Z5J1 315 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 WDR48Q8TAF3 677 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 PIK3R3Q92569 461 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 MCCC1Q96RQ3 725 aaPredicted RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 CDCA4Q9BXL8 241 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 ELAC1Q9H777 363 aaKnown RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 HHATLQ9HCP6 504 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 STARD7Q9NQZ5 370 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 C1GALT1Q9NS00 363 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 CLN6Q9NWW5 311 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 PRELID1Q9Y255 219 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 PLXNB3Q9ULL4 1909 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 SLC16A5O15375 505 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 UGDHO60701 494 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 IMPA1P29218 277 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 HNF4AP41235 474 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 XCR1P46094 333 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 CSNK1DP48730 415 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 PRSS53Q2L4Q9 553 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 RPS26P11Q5JNZ5 115 aaPredicted RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 FRMPD2BQ6IN97 320 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 PAQR6Q6TCH4 344 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 COMMD6Q7Z4G1 85 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 UBE2J2Q8N2K1 259 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 ECHDC3Q96DC8 303 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 TAS2R9Q9NYW1 312 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 MN1Q10571 1320 aaPredicted RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 MYOFQ9NZM1 2061 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 TRBV4-1A0A0J9YWV2 114 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.63□□□□□ -0.39
CLN3-210ENST00000563874 KPNA5O15131 536 aa12.63□□□□□ -0.39
CLN3-210ENST00000563874 ABLIM3O94929 683 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms