RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 HCAR2Q8TDS4 363 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TRPV4Q9HBA0 871 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ZSCAN32Q9NX65 697 aa8.83□□□□□ -1
VPS39-205ENST00000562258 SPHK1Q9NYA1 384 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ZFR2Q9UPR6 939 aaKnown RBP8.83□□□□□ -1
VPS39-205ENST00000562258 NAALAD2Q9Y3Q0 740 aa8.83□□□□□ -1
VPS39-205ENST00000562258 SPTY2D1-AS1A0A0U1RR47 76 aa8.83□□□□□ -1
VPS39-205ENST00000562258 HYKKA2RU49 373 aa8.83□□□□□ -1
VPS39-205ENST00000562258 CDC14CA4D256 554 aa8.83□□□□□ -1
VPS39-205ENST00000562258 AP1G1O43747 822 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TIPRLO75663 272 aa8.83□□□□□ -1
VPS39-205ENST00000562258 UBTFL6P0CB48 400 aaPredicted RBP8.83□□□□□ -1
VPS39-205ENST00000562258 GABRA3P34903 492 aa8.83□□□□□ -1
VPS39-205ENST00000562258 CLCN7P51798 805 aa8.83□□□□□ -1
VPS39-205ENST00000562258 GFERP55789 205 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ITGA1P56199 1179 aa8.83□□□□□ -1
VPS39-205ENST00000562258 HERC3Q15034 1050 aa8.83□□□□□ -1
VPS39-205ENST00000562258 FIGNL1Q6PIW4 674 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TMEM107Q6UX40 140 aa8.83□□□□□ -1
VPS39-205ENST00000562258 LRRC69Q6ZNQ3 347 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TECPR1Q7Z6L1 1165 aa8.83□□□□□ -1
VPS39-205ENST00000562258 LUZP2Q86TE4 346 aa8.83□□□□□ -1
VPS39-205ENST00000562258 GALNT12Q8IXK2 581 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ULK2Q8IYT8 1036 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ZNF683Q8IZ20 524 aa8.83□□□□□ -1
VPS39-205ENST00000562258 CATSPER1Q8NEC5 780 aa8.83□□□□□ -1
VPS39-205ENST00000562258 OR4K17Q8NGC6 315 aa8.83□□□□□ -1
VPS39-205ENST00000562258 SLC45A3Q96JT2 553 aa8.83□□□□□ -1
VPS39-205ENST00000562258 MSLNLQ96KJ4 702 aa8.83□□□□□ -1
VPS39-205ENST00000562258 COQ10AQ96MF6 247 aa8.83□□□□□ -1
VPS39-205ENST00000562258 CD248Q9HCU0 757 aa8.83□□□□□ -1
VPS39-205ENST00000562258 MS4A12Q9NXJ0 267 aa8.83□□□□□ -1
VPS39-205ENST00000562258 KCMF1Q9P0J7 381 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TESMINQ9Y4I5 508 aa8.83□□□□□ -1
VPS39-205ENST00000562258 FAM234BA2RU67 622 aa8.83□□□□□ -1
VPS39-205ENST00000562258 CYP4B1P13584 511 aa8.83□□□□□ -1
VPS39-205ENST00000562258 GRIK2Q13002 908 aa8.83□□□□□ -1
VPS39-205ENST00000562258 METRNLQ641Q3 311 aa8.83□□□□□ -1
VPS39-205ENST00000562258 OR4C11Q6IEV9 310 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TTC33Q6PID6 262 aaPredicted RBP8.83□□□□□ -1
VPS39-205ENST00000562258 NRROSQ86YC3 692 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ZNF548Q8NEK5 533 aaPredicted RBP8.83□□□□□ -1
VPS39-205ENST00000562258 IFI44Q8TCB0 444 aa8.83□□□□□ -1
VPS39-205ENST00000562258 GRHL3Q8TE85 626 aa8.83□□□□□ -1
VPS39-205ENST00000562258 EZH1Q92800 747 aaPredicted RBP8.83□□□□□ -1
VPS39-205ENST00000562258 DAZLQ92904 295 aaKnown RBP8.83□□□□□ -1
VPS39-205ENST00000562258 VPS35Q96QK1 796 aa8.83□□□□□ -1
VPS39-205ENST00000562258 HOPXQ9BPY8 73 aaPredicted RBP8.83□□□□□ -1
VPS39-205ENST00000562258 EBF1Q9UH73 591 aa8.83□□□□□ -1
VPS39-205ENST00000562258 PRDM4Q9UKN5 801 aa8.83□□□□□ -1
VPS39-205ENST00000562258 NCOR2Q9Y618 2525 aa8.83□□□□□ -1
VPS39-205ENST00000562258 DUXAA6NLW8 204 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TNFRSF10CO14798 259 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TP73O15350 636 aa8.83□□□□□ -1
VPS39-205ENST00000562258 SIGLEC6O43699 453 aa8.83□□□□□ -1
VPS39-205ENST00000562258 FZD6O60353 706 aa8.83□□□□□ -1
VPS39-205ENST00000562258 CDC40O60508 579 aaKnown RBP eCLIP8.83□□□□□ -1
VPS39-205ENST00000562258 PRAMEF10O60809 474 aa8.83□□□□□ -1
VPS39-205ENST00000562258 KLHL18O94889 574 aa8.83□□□□□ -1
VPS39-205ENST00000562258 PGM3O95394 542 aa8.83□□□□□ -1
VPS39-205ENST00000562258 BMP1P13497 986 aa8.83□□□□□ -1
VPS39-205ENST00000562258 TCN2P20062 427 aa8.83□□□□□ -1
VPS39-205ENST00000562258 PAICSP22234 425 aaKnown RBP8.83□□□□□ -1
VPS39-205ENST00000562258 CCR5P51681 352 aa8.83□□□□□ -1
VPS39-205ENST00000562258 DCDC1P59894 354 aa8.83□□□□□ -1
VPS39-205ENST00000562258 DPY19L1Q2PZI1 675 aa8.83□□□□□ -1
VPS39-205ENST00000562258 C5orf22Q49AR2 442 aa8.83□□□□□ -1
VPS39-205ENST00000562258 KLHL12Q53G59 568 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ZNF730Q6ZMV8 503 aa8.83□□□□□ -1
VPS39-205ENST00000562258 UBE2Q1Q7Z7E8 422 aa8.83□□□□□ -1
VPS39-205ENST00000562258 IQCHQ86VS3 1027 aa8.83□□□□□ -1
VPS39-205ENST00000562258 UBQLNLQ8IYU4 475 aa8.83□□□□□ -1
VPS39-205ENST00000562258 DLG3Q92796 817 aa8.83□□□□□ -1
VPS39-205ENST00000562258 C1QTNF1Q9BXJ1 281 aa8.83□□□□□ -1
VPS39-205ENST00000562258 ALOXE3Q9BYJ1 711 aa8.83□□□□□ -1
VPS39-205ENST00000562258 REEP4Q9H6H4 257 aa8.83□□□□□ -1
VPS39-205ENST00000562258 DCLRE1BQ9H816 532 aa8.83□□□□□ -1
VPS39-205ENST00000562258 SCN3BQ9NY72 215 aa8.83□□□□□ -1
VPS39-205ENST00000562258 WDR37Q9Y2I8 494 aa8.83□□□□□ -1
VPS39-205ENST00000562258 WDR45Q9Y484 360 aa8.83□□□□□ -1
VPS39-205ENST00000562258 CROCCQ5TZA2 2017 aa8.82□□□□□ -1
VPS39-205ENST00000562258 DLL1O00548 723 aa8.82□□□□□ -1
VPS39-205ENST00000562258 SDHDO14521 159 aa8.82□□□□□ -1
VPS39-205ENST00000562258 CRISP3P54108 245 aa8.82□□□□□ -1
VPS39-205ENST00000562258 ARSFP54793 590 aa8.82□□□□□ -1
VPS39-205ENST00000562258 EMX2Q04743 252 aa8.82□□□□□ -1
VPS39-205ENST00000562258 SLC14A2Q15849 920 aa8.82□□□□□ -1
VPS39-205ENST00000562258 WDR53Q7Z5U6 358 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 RNF130Q86XS8 419 aa8.82□□□□□ -1
VPS39-205ENST00000562258 PRR22Q8IZ63 422 aa8.82□□□□□ -1
VPS39-205ENST00000562258 ACOT4Q8N9L9 421 aa8.82□□□□□ -1
VPS39-205ENST00000562258 IPCEF1Q8WWN9 437 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 ATOH8Q96SQ7 321 aa8.82□□□□□ -1
VPS39-205ENST00000562258 KCNK13Q9HB14 408 aa8.82□□□□□ -1
VPS39-205ENST00000562258 ZNF282Q9UDV7 671 aaPredicted RBP8.82□□□□□ -1
VPS39-205ENST00000562258 TRPS1Q9UHF7 1281 aa8.82□□□□□ -1
VPS39-205ENST00000562258 LOC285556D6RIA3 1793 aa8.82□□□□□ -1
VPS39-205ENST00000562258 G3V2L1 256 aa8.82□□□□□ -1
VPS39-205ENST00000562258 H7C0S8 307 aa8.82□□□□□ -1
VPS39-205ENST00000562258 DIRAS1O95057 198 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms