RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 FIGLAQ6QHK4 219 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 SCIMPQ6UWF3 145 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 MTDHQ86UE4 582 aaKnown RBP11.21□□□□□ -0.61
LDLR-212ENST00000560467 LAS2Q8IYD9 372 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 FNDC5Q8NAU1 212 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 SRFBP1Q8NEF9 429 aaKnown RBP11.21□□□□□ -0.61
LDLR-212ENST00000560467 OR4K1Q8NGD4 311 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 C10orf82Q8WW14 230 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 CMTM7Q96FZ5 175 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 OR2A14Q96R47 310 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 MTERF1Q99551 399 aaKnown RBP11.21□□□□□ -0.61
LDLR-212ENST00000560467 ZBTB18Q99592 522 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 RAB33BQ9H082 229 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 C1GALT1Q9NS00 363 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 C1orf109Q9NX04 203 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 ZFP69BQ9UJL9 534 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 RARRES3Q9UL19 164 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 SLC12A4Q9UP95 1085 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 TMED5Q9Y3A6 229 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 TSC22D4Q9Y3Q8 395 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 DOPEY1Q5JWR5 2465 aa11.21□□□□□ -0.61
LDLR-212ENST00000560467 A0A088AWK7 358 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 ATP6AP2A0A1C7CYW4 349 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 A0A1W2PPV9 198 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 SERTM1A2A2V5 107 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 E9PBE3 544 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 PRICKLE3O43900 615 aaPredicted RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 KLHL41O60662 606 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 ATP6AP2O75787 350 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 RSL1D1O76021 490 aaKnown RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 SERPINA6P08185 405 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 SLC35G6P0C7Q6 338 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 IDO1P14902 403 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 DDX5P17844 614 aaKnown RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 ZNF10P21506 573 aaPredicted RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 ADSLP30566 484 aaPredicted RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 GRIA3P42263 894 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 MNAT1P51948 309 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 NEK2P51955 445 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 STXBP1P61764 594 aaKnown RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 ERVK-8P63133 956 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 CSNK1G2P78368 415 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 REEP5Q00765 189 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 MEF2AQ02078 507 aaPredicted RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 RELAQ04206 551 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 ACSM2AQ08AH3 577 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 AP5B1Q2VPB7 878 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 LSM12Q3MHD2 195 aaKnown RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 SLC9B1Q4ZJI4 515 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 SPIN4Q56A73 249 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 ACSM2BQ68CK6 577 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 CCDC121Q6ZUS5 278 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 TRPM8Q7Z2W7 1104 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 PAGE2Q7Z2X7 111 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 HUS1BQ8NHY5 278 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 TCTN2Q96GX1 697 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 SLC41A2Q96JW4 573 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 EBF4Q9BQW3 602 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 SLC25A23Q9BV35 468 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 RHBGQ9H310 441 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 AKTIPQ9H8T0 292 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 KCNK13Q9HB14 408 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 LRTM1Q9HBL6 345 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 PDE7BQ9NP56 450 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 SOHLH2Q9NX45 425 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 NOP53Q9NZM5 478 aaKnown RBP11.2□□□□□ -0.62
LDLR-212ENST00000560467 ZNF225Q9UK10 706 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 POMT2Q9UKY4 750 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 MAPRE3Q9UPY8 281 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 MAP4K5Q9Y4K4 846 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 CENPEQ02224 2701 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 ITPR2Q14571 2701 aa11.2□□□□□ -0.62
LDLR-212ENST00000560467 A0A1B0GTL3 188 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 TLCD2A6NGC4 264 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 CCT8L1PA6NM43 557 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 SDHDO14521 159 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 ZNF195O14628 629 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 SLC22A2O15244 555 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 CLEC3AO75596 197 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 RECKO95980 971 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 PTPN4P29074 926 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 RASSF2P50749 326 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 CCL11P51671 97 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 SKP1P63208 163 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 EMX2Q04743 252 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 MRPL49Q13405 166 aaKnown RBP11.19□□□□□ -0.62
LDLR-212ENST00000560467 CUL3Q13618 768 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 E2F2Q14209 437 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 SQLEQ14534 574 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 MAPRE2Q15555 327 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 FAM69BQ5VUD6 431 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 ZNF787Q6DD87 383 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 CYB5D1Q6P9G0 228 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 ZNF771Q7L3S4 317 aaPredicted RBP11.19□□□□□ -0.62
LDLR-212ENST00000560467 MIER2Q8N344 545 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 MFSD9Q8NBP5 474 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 CAMKVQ8NCB2 501 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 SLC13A3Q8WWT9 602 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 THAP4Q8WY91 577 aa11.19□□□□□ -0.62
LDLR-212ENST00000560467 RGMAQ96B86 450 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms