RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 A0A0U1RQF3 1178 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 FADS2P1A8MWK0 482 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PRAMEF4O60810 478 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PTPN2P17706 415 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PRKACBP22694 351 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 ACVR2AP27037 513 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 UGT2B10P36537 528 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 AVPR1BP47901 424 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 CLCN4P51793 760 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 CDH4P55283 916 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 RPS13P62277 151 aaKnown RBP10.87□□□□□ -0.67
LDLR-208ENST00000558518 HBA1P69905 142 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 GPR50Q13585 617 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 DOC2AQ14183 400 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 ZSWIM7Q19AV6 140 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 ARTNQ5T4W7 220 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PXDC1Q5TGL8 231 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PRAMEF9Q5VWM5 478 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 ERICH5Q6P6B1 374 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 TTC23LQ6PF05 361 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 TRIM46Q7Z4K8 759 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 CCDC190Q86UF4 302 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 NPAS3Q8IXF0 933 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 WFDC5Q8TCV5 224 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PEX13Q92968 403 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 ARMC5Q96C12 935 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 SNX18Q96RF0 628 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 PKMYT1Q99640 499 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 YIPF4Q9BSR8 244 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 P2RY12Q9H244 342 aa10.87□□□□□ -0.67
LDLR-208ENST00000558518 TRBV4-1A0A0J9YWV2 114 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 DRGXA6NNA5 263 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 M0QZQ0 153 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CAPN5O15484 640 aaPredicted RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 CLDN11O75508 207 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ANXA8P13928 327 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ATF4P18848 351 aaPredicted RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 PTPN6P29350 595 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 OR1D2P34982 312 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 HMGCLP35914 325 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 MAGEA2P43356 314 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 P2RX3P56373 397 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 GRB14Q14449 540 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CLPPQ16740 277 aaPredicted RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 LRIF1Q5T3J3 769 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ZNF772Q68DY9 489 aaPredicted RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 SERPINA11Q86U17 422 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CCDC28AQ8IWP9 274 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 Q8N402 240 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 KIAA1958Q8N8K9 716 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CMTM7Q96FZ5 175 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 C7orf34Q96L11 122 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 TBX5Q99593 518 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 TSSK6Q9BXA6 273 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 RNF121Q9H920 327 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 MIEF1Q9NQG6 463 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 TRPC4Q9UBN4 977 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 IGLV3-10A0A075B6K4 115 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 C2orf92A0A1B0GVN3 265 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 GRXCR2A6NFK2 248 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ADAM12O43184 909 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 COCHO43405 550 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 PDE9AO76083 593 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 BCHEP06276 602 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ALPPL2P10696 532 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ENDOUP21128 410 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 SSTR2P30874 369 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 KIR2DL3P43628 341 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 SLC16A1P53985 500 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CDK6Q00534 326 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 SRSF11Q05519 484 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 ZNF79Q15937 498 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 MICAQ29983 383 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 FBXO43Q4G163 708 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 SPOUT1Q5T280 376 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 GCNT6Q5T4J0 391 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ALG1LQ6GMV1 187 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CXorf57Q6NSI4 855 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 SLC37A3Q8NCC5 494 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 GRPEL2Q8TAA5 225 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ZNF624Q9P2J8 865 aaPredicted RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 AP3M1Q9Y2T2 418 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 A0A0X1KG70 313 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 HMX3A6NHT5 357 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ITGA2P17301 1181 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ACRV1P26436 265 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CCT3P49368 545 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 MAPK12P53778 367 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 SELENOWP63302 87 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CSTF1Q05048 431 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 HSPB3Q12988 150 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 NCF4Q15080 339 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 TAF1CQ15572 869 aaPredicted RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 DUSP7Q16829 419 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ZXDCQ2QGD7 858 aaPredicted RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 PLAG1Q6DJT9 500 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 FAHD1Q6P587 224 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 IL20RBQ6UXL0 311 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CERS6Q6ZMG9 384 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 PDZD3Q86UT5 571 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms