RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SP8Q8IXZ3 490 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 PGBD5Q8N414 524 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 OR52K2Q8NGK3 314 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 OR14A16Q8NHC5 309 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF516Q92618 1163 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 SLC25A46Q96AG3 418 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 OTUB1Q96FW1 271 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 POM121Q96HA1 1249 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 PEBP4Q96S96 227 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ST6GALNAC4Q9H4F1 302 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 MAGIXQ9H6Y5 334 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CRTAC1Q9NQ79 661 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 PDGFCQ9NRA1 345 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF490Q9ULM2 529 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 A0A0U1RQF3 1178 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 NEMP2A6NFY4 417 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 FFAR3O14843 346 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CASC3O15234 703 aaKnown RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 GPR42O15529 346 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 SNAPC5O75971 98 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 SNHG28P0DPA3 235 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 NCF1P14598 390 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 RAB4AP20338 218 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 EPHA2P29317 976 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 SLC6A1P30531 599 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CD96P40200 585 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CASP2P42575 452 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 MAGEA2P43356 314 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CDK8P49336 464 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 PGGT1BP53609 377 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 TBX4P57082 545 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 RAB5BP61020 215 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 OSTNP61366 133 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 GK2Q14410 553 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 MXD4Q14582 209 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 SMCO1Q147U7 214 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 CELF3Q5SZQ8 465 aaKnown RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 LHFPL3Q86UP9 236 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 LDLRAD3Q86YD5 345 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 KLBQ86Z14 1044 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ULK4Q96C45 1275 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 TRIM62Q9BVG3 475 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 TWSG1Q9GZX9 223 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 VSX1Q9NZR4 365 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-226ENST00000556825 POLLQ9UGP5 575 aa13.28□□□□□ -0.28
SHMT2-226ENST00000556825 ARHGEF33A8MVX0 844 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 E9PQ18 207 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 UBFD1O14562 309 aaKnown RBP13.27□□□□□ -0.28
SHMT2-226ENST00000556825 LBPP18428 481 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 ITPKAP23677 461 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF155Q12901 538 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-226ENST00000556825 PLA1AQ53H76 456 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 B3GNTL1Q67FW5 361 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-226ENST00000556825 METAP1DQ6UB28 335 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-226ENST00000556825 CRTC1Q6UUV9 634 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 RPS27LQ71UM5 84 aaKnown RBP13.27□□□□□ -0.28
SHMT2-226ENST00000556825 REC114Q7Z4M0 266 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 SKA3Q8IX90 412 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 ARRDC1Q8N5I2 433 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 CLDN22Q8N7P3 220 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 TRPV1Q8NER1 839 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 OR52E4Q8NGH9 312 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 BARD1Q99728 777 aaKnown RBP13.27□□□□□ -0.28
SHMT2-226ENST00000556825 SYNDIG1Q9H7V2 258 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 B3GAT2Q9NPZ5 323 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 LATS2Q9NRM7 1088 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 PPP4R1LQ9P1A2 415 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 GIMAP2Q9UG22 337 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 GPR45Q9Y5Y3 372 aa13.27□□□□□ -0.28
SHMT2-226ENST00000556825 CITO14578 2027 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 SNED1Q8TER0 1413 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 ZCWPW2A0A1B0GU75 182 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 PPEF2O14830 753 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 SULT1A3P0DMM9 295 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 SULT1A4P0DMN0 295 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 RPS2P15880 293 aaKnown RBP13.27□□□□□ -0.29
SHMT2-226ENST00000556825 HOXB6P17509 224 aaKnown RBP13.27□□□□□ -0.29
SHMT2-226ENST00000556825 ITGB7P26010 798 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 ZFP36L2P47974 494 aaKnown RBP13.27□□□□□ -0.29
SHMT2-226ENST00000556825 AFF1P51825 1210 aaKnown RBP13.27□□□□□ -0.29
SHMT2-226ENST00000556825 GTF2A2P52657 109 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 CTSCP53634 463 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 CDH4P55283 916 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 UAP1L1Q3KQV9 507 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 LBHQ53QV2 105 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-226ENST00000556825 DET1Q7L5Y6 550 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 TMEM135Q86UB9 458 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 PRR18Q8N4B5 295 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 SOX7Q9BT81 388 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 FN3KQ9H479 309 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 ANKRA2Q9H9E1 313 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 APOBEC3GQ9HC16 384 aaKnown RBP13.27□□□□□ -0.29
SHMT2-226ENST00000556825 VNN3Q9NY84 501 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 MPP6Q9NZW5 540 aa13.27□□□□□ -0.29
SHMT2-226ENST00000556825 PLEKHB1Q9UF11 243 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-226ENST00000556825 OR6C68A6NDL8 312 aa13.26□□□□□ -0.29
SHMT2-226ENST00000556825 G3V3Q6 166 aa13.26□□□□□ -0.29
SHMT2-226ENST00000556825 GPR171O14626 319 aa13.26□□□□□ -0.29
SHMT2-226ENST00000556825 TXNL1O43396 289 aa13.26□□□□□ -0.29
SHMT2-226ENST00000556825 TGM5O43548 720 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms