RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 MLXIPLQ9NP71 852 aa11.63□□□□□ -0.55
SYNE2-214ENST00000554928 NECTIN3Q9NQS3 549 aa11.63□□□□□ -0.55
SYNE2-214ENST00000554928 PCDHGA11Q9Y5H2 935 aa11.63□□□□□ -0.55
SYNE2-214ENST00000554928 A0A1W2PQ72 361 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 EEDO75530 441 aaKnown RBP11.62□□□□□ -0.55
SYNE2-214ENST00000554928 PRKRAO75569 313 aaKnown RBP11.62□□□□□ -0.55
SYNE2-214ENST00000554928 SEC24DO94855 1032 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-214ENST00000554928 C8orf89P0DMQ9 161 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 RNH1P13489 461 aaKnown RBP11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CPA3P15088 417 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CHN1P15882 459 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 PPP2R1BP30154 601 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 PIK3CBP42338 1070 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CCT5P48643 541 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CD97P48960 835 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 MTTPP55157 894 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 FOXA1P55317 472 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 LIM2P55344 173 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 ABRAXAS2Q15018 415 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 GGTA1PQ4G0N0 100 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 BEND6Q5SZJ8 279 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CEP85LQ5SZL2 805 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 TRIM40Q6P9F5 258 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 ATG14Q6ZNE5 492 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 C10orf107Q8IVU9 208 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 GALNT16Q8N428 558 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CDYL2Q8N8U2 506 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 ACOT4Q8N9L9 421 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 PLPP5Q8NEB5 264 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 UCN3Q969E3 161 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CMTM7Q96FZ5 175 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 FAR2Q96K12 515 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 FER1L6-AS2Q96M78 137 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 IP6K3Q96PC2 410 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 FAM111AQ96PZ2 611 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 OR1F2PQ96R84 312 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 SERINC2Q96SA4 455 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 SLC25A23Q9BV35 468 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 MECRQ9BV79 373 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 SHCBP1LQ9BZQ2 653 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 ZNF700Q9H0M5 742 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 ZNF552Q9H707 407 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-214ENST00000554928 MKS1Q9NXB0 559 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 KCMF1Q9P0J7 381 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 TUBD1Q9UJT1 453 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 GRID1Q9ULK0 1009 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 PLLPQ9Y342 182 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 TSC22D4Q9Y3Q8 395 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 CFAP46Q8IYW2 2715 aa11.62□□□□□ -0.55
SYNE2-214ENST00000554928 TLN1Q9Y490 2541 aaKnown RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 TNRC6AQ8NDV7 1962 aaKnown RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 IGKV3D-11A0A0A0MRZ8 115 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 WASHC1A8K0Z3 465 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 MKRN2OSH3BPM6 223 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 CYR61O00622 381 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 B3GALT2O43825 422 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 TMPRSS11DO60235 418 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 SCELO95171 688 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 OTCP00480 354 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 HPP00738 406 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 PDYNP01213 254 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 GBAP04062 536 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 HIST1H1TP22492 207 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 ITGA3P26006 1051 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 BSGP35613 385 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 SSR2P43308 183 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 NAGLUP54802 743 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 RRADP55042 308 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 HNRNPH2P55795 449 aaKnown RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 RAB38P57729 211 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 CCDC153Q494R4 210 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 LACTB2Q53H82 288 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 FRG2Q64ET8 278 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 TCTN3Q6NUS6 607 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 SCIMPQ6UWF3 145 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 NDUFAF7Q7L592 441 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 CPEB2Q7Z5Q1 589 aaKnown RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 CLNKQ7Z7G1 428 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 SLC22A9Q8IVM8 553 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 CCDC63Q8NA47 563 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 TCP10LQ8TDR4 215 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 PPP4R1Q8TF05 950 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 AGAP11Q8TF27 550 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 PSMF1Q92530 271 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 IMMP1LQ96LU5 166 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 KCNC2Q96PR1 638 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 FRG2BQ96QU4 278 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 ZNF382Q96SR6 550 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 TBCDQ9BTW9 1192 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 GATA5Q9BWX5 397 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 COPS7BQ9H9Q2 264 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 ATP13A2Q9NQ11 1180 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 RYDENQ9NUL5 291 aaKnown RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 OXSMQ9NWU1 459 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 GPR83Q9NYM4 423 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 TRPS1Q9UHF7 1281 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 DAPP1Q9UN19 280 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 TIMM22Q9Y584 194 aa11.61□□□□□ -0.55
SYNE2-214ENST00000554928 SPENQ96T58 3664 aaKnown RBP11.61□□□□□ -0.55
SYNE2-214ENST00000554928 NUP210LQ5VU65 1888 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms