RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 AP3D1O14617 1153 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 BCKDKO14874 412 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SH3BP5O60239 455 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 HS6ST1O60243 411 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PRLP01236 227 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PIRTP0C851 137 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 THEGLP0DJG4 465 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 C6P13671 934 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 CTPS1P17812 591 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ENPP1P22413 925 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SLC15A1P46059 708 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 MASP1P48740 699 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PRIM2P49643 509 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 NXPH1P58417 271 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SLC35A2P78381 396 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SGCGQ13326 291 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 CSHL1Q14406 222 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SHBQ15464 509 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 FXNQ16595 210 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TMEM52BQ4KMG9 183 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 Q5BKY6 102 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TECRLQ5HYJ1 363 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 CCNJQ5T5M9 372 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 FAM205BPQ63HN1 556 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ESRP1Q6NXG1 681 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SLC22A9Q8IVM8 553 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PAF1Q8N7H5 531 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SETD9Q8NE22 299 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 BLOC1S5Q8TDH9 187 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TSPEARQ8WU66 669 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 FBLIM1Q8WUP2 373 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PIH1D2Q8WWB5 315 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 GTF2H4Q92759 462 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SNAPC3Q92966 411 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TMEM74Q96NL1 305 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 APOL4Q9BPW4 351 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ZDHHC5Q9C0B5 715 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 NXF2Q9GZY0 626 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 GSTO2Q9H4Y5 243 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 DUSP21Q9H596 190 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ACOT13Q9NPJ3 140 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SDR39U1Q9NRG7 319 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TM7SF3Q9NS93 570 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 B4GALT6Q9UBX8 382 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SLC2A6Q9UGQ3 507 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 NUP50Q9UKX7 468 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SNX6Q9UNH7 406 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 USP22Q9UPT9 525 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ORC6Q9Y5N6 252 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PEX16Q9Y5Y5 336 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ZFC3H1O60293 1989 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 NPIPB15A6NHN6 443 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 H3BMM5 538 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SLC16A6O15403 523 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ARHGEF9O43307 516 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 RGS10O43665 173 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 AIREO43918 545 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 FZD6O60353 706 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 NOS1APO75052 506 aaPredicted RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SOCS5O75159 536 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 PGLSO95336 258 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CST1P01037 141 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 MT-ND2P03891 347 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 RBP1P09455 135 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ALPIP09923 528 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 DBTP11182 482 aaKnown RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 JUNDP17535 347 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 LBPP18428 481 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 HLA-DPA1P20036 260 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 LHCGRP22888 699 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 IL32P24001 234 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 FMO3P31513 532 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 AKT2P31751 481 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 TGFBR2P37173 567 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SLC26A3P40879 764 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CASP2P42575 452 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SLC9A3P48764 834 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 OR4D2P58180 307 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 TAS2R39P59534 338 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 POLR2LP62875 67 aaKnown RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ELP6Q0PNE2 266 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 EIF2B5Q13144 721 aaKnown RBP7.35□□□□□ -1.23
LIMA1-216ENST00000552909 WSCD2Q2TBF2 565 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 BCL7AQ4VC05 210 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ESCO2Q56NI9 601 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF542PQ5EBM4 170 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SPANXN2Q5MJ10 180 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 AGAP9Q5VTM2 703 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 SPESP1Q6UW49 350 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 LIPIQ6XZB0 460 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 Q6ZSR6 202 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 RFLNAQ6ZTI6 216 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 DGLUCYQ7Z3D6 616 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 ABI3BPQ7Z7G0 1075 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 B3GNT8Q7Z7M8 397 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 TSPAN33Q86UF1 283 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CACTIN-AS1Q8N1I8 211 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 DEFB124Q8NES8 71 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 LPCAT1Q8NF37 534 aa7.35□□□□□ -1.23
LIMA1-216ENST00000552909 CXorf40AQ8TE69 158 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms