RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TRANK1O15050 2925 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 C2orf72A6NCS6 295 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PLK4O00444 970 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 DPM1O60762 260 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 MRPS14O60783 128 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ATG13O75143 517 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 DLGAP3O95886 979 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 GASTP01350 101 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 RPLP0P05388 317 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 KLK1P06870 262 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 HSD3B1P14060 373 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 HSD3B2P26439 372 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 POU1F1P28069 291 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 OPRD1P41143 372 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 RECQLP46063 649 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 RGS6P49758 472 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 CDK6Q00534 326 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 EEF1A2Q05639 463 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 KCNJ8Q15842 424 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 LY6G5CQ5SRR4 150 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 C10orf62Q5T681 223 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SLC44A2Q8IWA5 706 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 TRAM1L1Q8N609 369 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 Q8N9G6 341 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 AQP11Q8NBQ7 271 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 MINDY2Q8NBR6 621 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 OR52N2Q8NGI0 321 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PXYLP1Q8TE99 480 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 C16orf78Q8WTQ4 265 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 GLYATL1Q969I3 302 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SLC35B4Q969S0 331 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 AP2M1Q96CW1 435 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 IL17FQ96PD4 163 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 IL4I1Q96RQ9 567 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 WFDC6Q9BQY6 131 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 IMPAD1Q9NX62 359 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 C5AR2Q9P296 337 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ANKMY1Q9P2S6 941 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PLAGL1Q9UM63 463 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 POFUT2Q9Y2G5 429 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 IFT52Q9Y366 437 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 FAM32AQ9Y421 112 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PCDHGA3Q9Y5H0 932 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SNX8Q9Y5X2 465 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 KCNE2Q9Y6J6 123 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SZT2Q5T011 3432 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SCN2AQ99250 2005 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 TRBC2A0A5B9 178 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PIPSLA2A3N6 862 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 HTR3EA5X5Y0 456 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 H3BM21 787 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 RTCAO00442 366 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 CTDSP2O14595 271 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 FFAR1O14842 300 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SEMA7AO75326 666 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 AP2A2O94973 939 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SOX14O95416 240 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 C1orf105O95561 183 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 IL3P08700 152 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 CYP2A6P11509 494 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ANXA8P13928 327 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF30P17039 623 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ALOX12P18054 663 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PPIBP23284 216 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 HOXD10P28358 340 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 CNR2P34972 360 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 RCVRNP35243 200 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 CHI3L1P36222 383 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 UGT2B10P36537 528 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 XCR1P46094 333 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PRLHRP49683 370 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 LIMK1P53667 647 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 LIM2P55344 173 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PUM1Q14671 1186 aaKnown RBP eCLIP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 TSTQ16762 297 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF284Q2VY69 593 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 UAP1L1Q3KQV9 507 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 USP43Q70EL4 1123 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 BCDIN3DQ7Z5W3 292 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 TECPR1Q7Z6L1 1165 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 DDX53Q86TM3 631 aaKnown RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 VN1R2Q8NFZ6 395 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ATL1Q8WXF7 558 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 STARD8Q92502 1023 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 FCGR1BQ92637 280 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 PPCDCQ96CD2 204 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ZNF689Q96CS4 500 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 MRGPRX3Q96LB0 322 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 MAGEB10Q96LZ2 347 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 COL21A1Q96P44 957 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 DEFB118Q96PH6 123 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 KCNS3Q9BQ31 491 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ZSCAN5AQ9BUG6 496 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 ACAT2Q9BWD1 397 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SPATA9Q9BWV2 254 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 BHLHE41Q9C0J9 482 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-213ENST00000552720 SLC6A16Q9GZN6 736 aa7.17□□□□□ -1.26
LIMA1-213ENST00000552720 C11orf16Q9NQ32 467 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms