RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PSME2Q9UL46 239 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 STON1Q9Y6Q2 735 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 NINQ8N4C6 2090 aa17.7■□□□□ 0.42
PRPF40B-208ENST00000548436 UNC80Q8N2C7 3258 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 A0A1W2PPV9 198 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 GALK1P51570 392 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 CXCR4P61073 352 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 NPTX1Q15818 432 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 IFI44LQ53G44 452 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 ABCG4Q9H172 646 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 EPS8L2Q9H6S3 715 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 CXorf36Q9H7Y0 433 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 PELI2Q9HAT8 420 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 WASH6PQ9NQA3 447 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 ICKQ9UPZ9 632 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 PCDHGA10Q9Y5H3 936 aa17.69■□□□□ 0.42
PRPF40B-208ENST00000548436 ZNF99A8MXY4 864 aaPredicted RBP17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 H7BY64 318 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 TNFRSF11BO00300 401 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 MAN1A2O60476 641 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 FUCA1P04066 466 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 NR4A1P22736 598 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 BSGP35613 385 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 MAP2K4P45985 399 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 CLCNKAP51800 687 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 ERVK-21P61565 698 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 CST6Q15828 149 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 C2orf27AQ580R0 203 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 TM4SF18Q96CE8 201 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 PRAP1Q96NZ9 151 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 AIF1LQ9BQI0 150 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 TEX101Q9BY14 249 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 PLGRKTQ9HBL7 147 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 SLAMF7Q9NQ25 335 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 RASSF1Q9NS23 344 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 AHSPQ9NZD4 102 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 WDR37Q9Y2I8 494 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 TPRKBQ9Y3C4 175 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 NDUFS2O75306 463 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 RPN2P04844 631 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 ARAFP10398 606 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 RXRGP48443 463 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 AQP6Q13520 282 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 ELOAQ14241 798 aaKnown RBP17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 CRB2Q5IJ48 1285 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 Q6ZPB1 254 aaPredicted RBP17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 ABHD11Q8NFV4 315 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 OR4C15Q8NGM1 316 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 OR52J3Q8NH60 311 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 GIPC3Q8TF64 312 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 KCNC2Q96PR1 638 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 ZNF300Q96RE9 604 aaPredicted RBP17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 FEVQ99581 238 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 GABARAPL3Q9BY60 117 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 SNX8Q9Y5X2 465 aa17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 DNMT3AQ9Y6K1 912 aaPredicted RBP17.68■□□□□ 0.42
PRPF40B-208ENST00000548436 A0A0J9YVX5 310 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 ADAMDEC1O15204 470 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 KMOO15229 486 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 PCDHGA12O60330 932 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 WBP4O75554 376 aaKnown RBP17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 DNAJB5O75953 348 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 SEMA3DO95025 777 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 KRT75O95678 551 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 DDCP20711 480 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 CCR8P51685 355 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 MAPK12P53778 367 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 PCBP3P57721 371 aaKnown RBP17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 FGL2Q14314 439 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 ZNF630Q2M218 657 aaPredicted RBP17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 ZBTB46Q86UZ6 589 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 HDDC3Q8N4P3 179 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 LINC01555Q8NAE3 123 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 APH1BQ8WW43 257 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 KLK6Q92876 244 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 HRASLS5Q96KN8 279 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 RSPH9Q9H1X1 276 aaPredicted RBP17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 LHX9Q9NQ69 397 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 RLIMQ9NVW2 624 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 SCN3BQ9NY72 215 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 ETAA1Q9NY74 926 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 ENPP5Q9UJA9 477 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 PCDHGA6Q9Y5G7 932 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 PRAMEF33A0A0G2JMD5 474 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 A0A1W2PP55 124 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 J3KTA2 159 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 LATO43561 262 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 PRAMEF10O60809 474 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 BCL10O95999 233 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 PAK4O96013 591 aaPredicted RBP17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 INHBBP09529 407 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 SLC35G4P0C7Q5 338 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 UQCRC2P22695 453 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 ACVR2AP27037 513 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 KRT20P35900 424 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 HSD17B2P37059 387 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 MASP1P48740 699 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 REEP5Q00765 189 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 SPIBQ01892 262 aa17.67■□□□□ 0.42
PRPF40B-208ENST00000548436 SPCS2Q15005 226 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms