RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 SCUBE1Q8IWY4 988 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 TMEM132CQ8N3T6 1108 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 KIF2BQ8N4N8 673 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 AMER2Q8N7J2 671 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 PDPRQ8NCN5 879 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 NFAM1Q8NET5 270 aaPredicted RBP8.76□□□□□ -1.01
YBX3-218ENST00000546298 FBXO25Q8TCJ0 367 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 FBF1Q8TES7 1133 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 VMP1Q96GC9 406 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 MAGED4Q96JG8 741 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 GPR137Q96N19 417 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 QRFPRQ96P65 431 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 SIGLEC12Q96PQ1 595 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 NPAS2Q99743 824 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 CCDC77Q9BR77 488 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 TBCDQ9BTW9 1192 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 CD244Q9BZW8 370 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 TRIM45Q9H8W5 580 aaPredicted RBP8.76□□□□□ -1.01
YBX3-218ENST00000546298 PNO1Q9NRX1 252 aaKnown RBP8.76□□□□□ -1.01
YBX3-218ENST00000546298 NUDT4Q9NZJ9 180 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 OPTCQ9UBM4 332 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 ADGRE2Q9UHX3 823 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 FBXW2Q9UKT8 454 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 PPIEQ9UNP9 301 aaKnown RBP8.76□□□□□ -1.01
YBX3-218ENST00000546298 ENTPD4Q9Y227 616 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 ACOT9Q9Y305 439 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 SPACA6W5XKT8 324 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 USP9XQ93008 2570 aaPredicted RBP8.76□□□□□ -1.01
YBX3-218ENST00000546298 CCDC88CQ9P219 2028 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 BOD1L1Q8NFC6 3051 aa8.76□□□□□ -1.01
YBX3-218ENST00000546298 NOTCH2Q04721 2471 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 A0A087X1B8 175 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 A0A0G2JN53 185 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 TRBV11-1A0A0K0K1C0 115 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 SYCE1LA8MT33 242 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 SUPT3HB4E1H0 165 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 C4orf51C9J302 202 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 NPIPA5E9PKD4 350 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 KLRC4-KLRK1H3BQV0 150 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 HNRNPRO43390 633 aaKnown RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 NME2P1O60361 137 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 MAN1A2O60476 641 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 SLC19A2O60779 497 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 CTNSO60931 367 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 SUPT3HO75486 399 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 NEURL1O76050 574 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ZFAND5O76080 213 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 MYO1DO94832 1006 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 IFNA16P05015 189 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ESRRAP11474 423 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 ZNF24P17028 368 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 NME2P22392 152 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 TPP2P29144 1249 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 HNRNPH1P31943 449 aaKnown RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 CA7P43166 264 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 MSH2P43246 934 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 KCNC1P48547 511 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 SMSP52788 366 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 PMP22Q01453 160 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 SRSF11Q05519 484 aaKnown RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 PCDH1Q08174 1060 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ART3Q13508 389 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 OR4D1Q15615 310 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 AP5B1Q2VPB7 878 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 TMEM35AQ53FP2 167 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ZNF787Q6DD87 383 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 MED27Q6P2C8 311 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ZNF572Q7Z3I7 529 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 ISCA2Q86U28 154 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 EID3Q8N140 333 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ARMC10Q8N2F6 343 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ZNF808Q8N4W9 903 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 TMEM156Q8N614 296 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 POGLUT1Q8NBL1 392 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 DAZLQ92904 295 aaKnown RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 EXT2Q93063 718 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ESAMQ96AP7 390 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 KCNC2Q96PR1 638 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 CENPKQ9BS16 269 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 AICDAQ9GZX7 198 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ALG9Q9H6U8 611 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 LYRM4Q9HD34 91 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ADAP2Q9NPF8 381 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 ZNF490Q9ULM2 529 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 DAPP1Q9UN19 280 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 NPIPA1Q9UND3 350 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 KLF13Q9Y2Y9 288 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 ANGPTL3Q9Y5C1 460 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 KLF2Q9Y5W3 355 aaPredicted RBP8.75□□□□□ -1.01
YBX3-218ENST00000546298 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.75□□□□□ -1.01
YBX3-218ENST00000546298 CLCA3PQ9Y6N3 262 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 PCM1Q15154 2024 aa8.75□□□□□ -1.01
YBX3-218ENST00000546298 HEATR5BQ9P2D3 2071 aa8.74□□□□□ -1.01
YBX3-218ENST00000546298 PRSS44E7EML9 344 aa8.74□□□□□ -1.01
YBX3-218ENST00000546298 K7EPI3 171 aa8.74□□□□□ -1.01
YBX3-218ENST00000546298 CYR61O00622 381 aa8.74□□□□□ -1.01
YBX3-218ENST00000546298 ASNA1O43681 348 aa8.74□□□□□ -1.01
YBX3-218ENST00000546298 KERAO60938 352 aa8.74□□□□□ -1.01
YBX3-218ENST00000546298 FAM155BO75949 473 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms