RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TAS2R41P59536 307 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 CDK6Q00534 326 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 SNTA1Q13424 505 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 STK11Q15831 433 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 FAM110CQ1W6H9 321 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 DEFB115Q30KQ5 88 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 CNIH2Q6PI25 160 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 ARL9Q6T311 187 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 TMEM207Q6UWW9 146 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 TMEM179BQ7Z7N9 219 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 NLGN4XQ8N0W4 816 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF655Q8N720 491 aaPredicted RBP13.71□□□□□ -0.22
LIMS1-215ENST00000544547 BEST4Q8NFU0 473 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 NEIL3Q8TAT5 605 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 CXorf40AQ8TE69 158 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 UBE2E3Q969T4 207 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 EGLN2Q96KS0 407 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 SPACA7Q96KW9 195 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 FUZQ9BT04 418 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 RBCK1Q9BYM8 510 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 SLC35C2Q9NQQ7 365 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 KCNN3Q9UGI6 736 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 MKL2Q9ULH7 1088 aa13.71□□□□□ -0.22
LIMS1-215ENST00000544547 COL16A1Q07092 1604 aaPredicted RBP13.71□□□□□ -0.22
LIMS1-215ENST00000544547 FAM25EA8MYX2 175 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 TP53P04637 393 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 KCNE1P15382 129 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 PTX3P26022 381 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CTNNB1P35222 781 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 YBEYP58557 167 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CDC20Q12834 499 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 TBCEQ15813 527 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 FRG2Q64ET8 278 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 GRAMD2AQ8IUY3 354 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 OR2T35Q8NGX2 323 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CLP1Q92989 425 aaKnown RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 FRG2BQ96QU4 278 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF607Q96SK3 696 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 NELL2Q99435 816 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ALG5Q9Y673 324 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 H7C2Y5 167 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 SMAD9O15198 467 aaKnown RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 PDYNP01213 254 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CYP17A1P05093 508 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ITGAMP11215 1152 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ALAS2P22557 587 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 MASP1P48740 699 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 NOGQ13253 232 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CCL14Q16627 93 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CERS6Q6ZMG9 384 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF730Q6ZMV8 503 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 Q6ZSR9 355 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 LINGO2Q7L985 606 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 SLC46A3Q7Z3Q1 461 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CNTN4Q8IWV2 1026 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 FTMTQ8N4E7 242 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ARMC5Q96C12 935 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 SMIM14Q96QK8 99 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 SLIRPQ9GZT3 109 aaKnown RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 RANBP3Q9H6Z4 567 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 VPS29Q9UBQ0 182 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 TMPRSS11EQ9UL52 423 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 STUB1Q9UNE7 303 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 PLCL2Q9UPR0 1127 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ZFR2Q9UPR6 939 aaKnown RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 TCRBV5S2A0A599 114 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 OR2A25A4D2G3 310 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 RFPL3O75679 317 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 APEX1P27695 318 aaKnown RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 SKP1P63208 163 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 HSPB3Q12988 150 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 PTCHD3Q3KNS1 767 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 KLHL22Q53GT1 634 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 GDPD1Q8N9F7 314 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CEP76Q8TAP6 659 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF300Q96RE9 604 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 NUDT15Q9NV35 164 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 KCTD5Q9NXV2 234 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 PHF11Q9UIL8 331 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 RUVBL1Q9Y265 456 aaKnown RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 A0A1B0GTL3 188 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 IQCMA0A1B0GVH7 501 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 OR2AG2A6NM03 316 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ARHGAP33O14559 1287 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 GPR39O43194 453 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ELNP15502 786 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 TACR2P21452 398 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF10P21506 573 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-215ENST00000544547 NTSP30990 170 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ASMTP46597 345 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 GPLD1P80108 840 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 CAMK2BQ13554 666 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 GPR68Q15743 365 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 HMGN2P46Q86SG4 172 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 DOHHQ9BU89 302 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 POLR1DQ9Y2S0 133 aa13.7□□□□□ -0.22
LIMS1-215ENST00000544547 ARID1AO14497 2285 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 GOLGB1Q14789 3259 aaKnown RBP13.69□□□□□ -0.22
LIMS1-215ENST00000544547 IGFBP4P22692 258 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 DDOSTP39656 456 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms