RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 UCN3Q969E3 161 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 SEC16BQ96JE7 1060 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 CNDP1Q96KN2 507 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 PTCHD1Q96NR3 888 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 SIGLEC12Q96PQ1 595 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 MAPKAP1Q9BPZ7 522 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 RHOXF2Q9BQY4 288 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 EFCAB11Q9BUY7 163 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 CAPS2Q9BXY5 557 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 REXO4Q9GZR2 422 aaKnown RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 RNF32Q9H0A6 362 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 ILKAPQ9H0C8 392 aaPredicted RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 VPS11Q9H270 941 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 OR51B5Q9H339 312 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 CNOT10Q9H9A5 744 aaKnown RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 CLK4Q9HAZ1 481 aaKnown RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 PRDM9Q9NQV7 894 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 ZNF180Q9UJW8 692 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 ZNF225Q9UK10 706 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 DAPP1Q9UN19 280 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 G3BP2Q9UN86 482 aaKnown RBP9.98□□□□□ -0.81
CD44-227ENST00000528086 RNF11Q9Y3C5 154 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 MYO7BQ6PIF6 2116 aa9.98□□□□□ -0.81
CD44-227ENST00000528086 GTF3C1Q12789 2109 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 WIPF3A6NGB9 483 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 A8MUA0 341 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 A8MUI8 341 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 KIF2AO00139 706 aaPredicted RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 SAP18O00422 153 aaKnown RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 PRMT3O60678 531 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 SCELO95171 688 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 ABHD2P08910 425 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 MST1P26927 711 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 GSTM2P28161 218 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 CD96P40200 585 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 PIK3CGP48736 1102 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 ALDH18A1P54886 795 aaKnown RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 RAB38P57729 211 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 STXBP1P61764 594 aaKnown RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 PMP22Q01453 160 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 TRAF3Q13114 568 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 TLR1Q15399 786 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 FAM83EQ2M2I3 478 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 ACER2Q5QJU3 275 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 HIST2H2BCQ6DN03 193 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 GRHL2Q6ISB3 625 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 ADGRD1Q6QNK2 874 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 DGAT2L6Q6ZPD8 337 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 KRT78Q8N1N4 520 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 TBC1D19Q8N5T2 526 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 ZNF321PQ8N8H1 164 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 PTGR2Q8N8N7 351 aaPredicted RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 L3MBTL4Q8NA19 623 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 FAM47BQ8NA70 645 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 TTLQ8NG68 377 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 OR1N1Q8NGS0 311 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 WDR20Q8TBZ3 569 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 CCT6BQ92526 530 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 ANKRD9Q96BM1 317 aaPredicted RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 CDK15Q96Q40 435 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 SLX1AQ9BQ83 275 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 NPLQ9BXD5 320 aaPredicted RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 DMRT3Q9NQL9 472 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 STMN3Q9NZ72 180 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 CPSF2Q9P2I0 782 aaKnown RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 XPR1Q9UBH6 696 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 OPTCQ9UBM4 332 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 ERRFI1Q9UJM3 462 aaPredicted RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 PCTPQ9UKL6 214 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 PPIEQ9UNP9 301 aaKnown RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 COPG1Q9Y678 874 aaKnown RBP9.97□□□□□ -0.81
CD44-227ENST00000528086 PCNX1Q96RV3 2341 aa9.97□□□□□ -0.81
CD44-227ENST00000528086 A0A087WUV0 522 aaPredicted RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 CCDC189A1A4V9 331 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 OR5H15A6NDH6 313 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 ANKDD1BA6NHY2 528 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 SAGE2PA6NJ88 616 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 PLPP1O14494 284 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 KLHL41O60662 606 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 ZNF354AO60765 605 aaPredicted RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 EEDO75530 441 aaKnown RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 PRKRAO75569 313 aaKnown RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 NEURL1O76050 574 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 SHBGP04278 402 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 RPS17P08708 135 aaKnown RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 ICAM2P13598 275 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 PHBP35232 272 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 NEK2P51955 445 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 HNRNPH2P55795 449 aaKnown RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 RPS13P62277 151 aaKnown RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 ZNF33BQ06732 778 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 TUBA3CQ13748 450 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 GTF2H2Q13888 395 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 DEPDC1Q5TB30 811 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 MRM1Q6IN84 353 aaKnown RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 RPUSD3Q6P087 351 aaKnown RBP9.96□□□□□ -0.82
CD44-227ENST00000528086 GTF2H2CQ6P1K8 395 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 MED27Q6P2C8 311 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 TUBA3EQ6PEY2 450 aa9.96□□□□□ -0.82
CD44-227ENST00000528086 TIFABQ6ZNK6 161 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms