RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MRPS31Q92665 395 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 EFHD2Q96C19 240 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 PPCDCQ96CD2 204 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ASPNQ9BXN1 380 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 REEP4Q9H6H4 257 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 C1GALT1Q9NS00 363 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SNTG1Q9NSN8 517 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 FKBP14Q9NWM8 211 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 MUTYHQ9UIF7 546 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SH2B3Q9UQQ2 575 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SMIM30A4D0T7 59 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 FADS2P1A8MWK0 482 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC16A5O15375 505 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 HOXA2O43364 376 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ENTPD6O75354 484 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 CCNB2O95067 398 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 URODP06132 367 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 KLK1P06870 262 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SP140Q13342 867 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SLBPQ14493 270 aaKnown RBP eCLIP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 RAD9AQ99638 391 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SDHCQ99643 169 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ACAT2Q9BWD1 397 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TIGARQ9NQ88 270 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 CORO2BQ9UQ03 480 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 CCRL2O00421 344 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SH3BP5O60239 455 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 PQBP1O60828 265 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ATN1P54259 1190 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 OR2B6P58173 313 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 OLR1P78380 273 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SSX1Q16384 188 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 LRRC26Q2I0M4 334 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 PRSS53Q2L4Q9 553 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 RPS26P11Q5JNZ5 115 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 MLIPQ5VWP3 458 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 MED27Q6P2C8 311 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TNFAIP8L2Q6P589 184 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 UBE2J2Q8N2K1 259 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 IL17RDQ8NFM7 739 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 OR52N2Q8NGI0 321 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 NMNAT1Q9HAN9 279 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 KLHL3Q9UH77 587 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 EFCAB10A6NFE3 127 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 H3BN98 237 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 GSTM1P09488 218 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 RPS19P39019 145 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 TMEM220Q6QAJ8 160 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 GDPD4Q6W3E5 623 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CELF5Q8N6W0 485 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC30A2Q9BRI3 323 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 NXF2Q9GZY0 626 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CLN6Q9NWW5 311 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 KLK4Q9Y5K2 254 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 SLCO2B1O94956 709 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 RECQLP46063 649 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CRISP1P54107 249 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF763Q0D2J5 394 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 TRIM40Q6P9F5 258 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 PAQR6Q6TCH4 344 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 SLCO4C1Q6ZQN7 724 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 WDR53Q7Z5U6 358 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 GPR65Q8IYL9 337 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 RAB8BQ92930 207 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 PIP5K1AQ99755 562 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 SPNS1Q9H2V7 528 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CCDC88CQ9P219 2028 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 A0A1W2PRB8 838 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 PLK4O00444 970 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 RNASET2O00584 256 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 UGDHO60701 494 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 DPM1O60762 260 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 LATS1O95835 1130 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ITGA2P17301 1181 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 SREBF2Q12772 1141 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 IRF3Q14653 427 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 AGAP6Q5VW22 663 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 TPGS2Q68CL5 300 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ATCAYQ86WG3 371 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 GPR151Q8TDV0 419 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF480Q8WV37 535 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 TMEM203Q969S6 136 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CRELD1Q96HD1 420 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 AGAP4Q96P64 663 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CCDC59Q9P031 241 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 MKLN1Q9UL63 735 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CFL2Q9Y281 166 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 N6AMT1Q9Y5N5 214 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ENPP4Q9Y6X5 453 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 A3GALT2U3KPV4 340 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 CASP8AP2Q9UKL3 1982 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 TRBV4-1A0A0J9YWV2 114 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 SERTM1A2A2V5 107 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 NEDD8-MDP1E9PL57 170 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 XPAP23025 273 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 TRIM60Q495X7 471 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 SPIN4Q56A73 249 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ARSIQ5FYB1 569 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 ARMC4Q5T2S8 1044 aa8.85□□□□□ -0.99
LIMCH1-215ENST00000512632 PLAG1Q6DJT9 500 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms