RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CACNG1Q06432 222 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 FASTKQ14296 549 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZNF658BQ4V348 819 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 CCDC92Q53HC0 331 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 C16orf87Q6PH81 154 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 Q71RC1 249 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 DET1Q7L5Y6 550 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 LCA5Q86VQ0 697 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZSCAN30Q86W11 494 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 CCDC63Q8NA47 563 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 TEKT1Q969V4 418 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 CCDC47Q96A33 483 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 FAM120BQ96EK7 910 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 RBM18Q96H35 190 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZNF396Q96N95 335 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 IQCGQ9H095 443 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZBP1Q9H171 429 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZNF319Q9P2F9 582 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 ADD3Q9UEY8 706 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 VPS28Q9UK41 221 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 ITGA11Q9UKX5 1188 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 PCDHGB4Q9UN71 923 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 DDX49Q9Y6V7 483 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZBED9Q6R2W3 1325 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 A0A1W2PPK0 400 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 FOXI3A8MTJ6 420 aaPredicted RBP1.76□□□□□ -2.13
NUP54-208ENST00000508604 TMCO5BA8MYB1 307 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 OR6B1O95007 311 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 CSN3P07498 182 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 ADRB2P07550 413 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 CSH1P0DML2 217 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 CSH2P0DML3 217 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 SKILP12757 684 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 CD22P20273 847 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 GDF1P27539 372 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 CLDN15P56746 228 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 CLDN17P56750 224 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 STX17P56962 302 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 OVGP1Q12889 678 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 TAF7Q15545 349 aaPredicted RBP1.76□□□□□ -2.13
NUP54-208ENST00000508604 RBBP7Q16576 425 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 NTRK2Q16620 822 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 ZSCAN26Q16670 478 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 Q6ZVQ6 151 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 BRINP3Q76B58 766 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 KRT77Q7Z794 578 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 LINC00346Q8IVM7 164 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 DND1Q8IYX4 353 aaKnown RBP1.76□□□□□ -2.13
NUP54-208ENST00000508604 MYOCDQ8IZQ8 938 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 CCDC191Q8NCU4 936 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 C17orf50Q8WW18 174 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 SERINC2Q96SA4 455 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 FEVQ99581 238 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 HSD17B14Q9BPX1 270 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 GOLPH3LQ9H4A5 285 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 TRPV5Q9NQA5 729 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 GIMAP4Q9NUV9 329 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 KLK12Q9UKR0 248 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 MTF2Q9Y483 593 aaPredicted RBP1.76□□□□□ -2.13
NUP54-208ENST00000508604 ARID1AO14497 2285 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 EEA1Q15075 1411 aa1.76□□□□□ -2.13
NUP54-208ENST00000508604 TRIM64CA6NLI5 447 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 FBP2O00757 339 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 ENTPD3O75355 529 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 GSRP00390 522 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 SERPING1P05155 500 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 ALOX12P18054 663 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 EEF1B2P24534 225 aaKnown RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 STIP1P31948 543 aaKnown RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 CUL4AQ13619 759 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 MFSD4BQ5TF39 518 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 Q6P435 159 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 ENOSF1Q7L5Y1 443 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 EFCAB13Q8IY85 973 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 H1FOOQ8IZA3 346 aaPredicted RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 GIMAP1Q8WWP7 306 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 FAM104AQ969W3 186 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 ELSPBP1Q96BH3 223 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 NDNQ99608 321 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 CPNE1Q99829 537 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 MXD3Q9BW11 206 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 HES7Q9BYE0 225 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 RWDD1Q9H446 243 aaPredicted RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 TSPY26PQ9H489 355 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 NOL11Q9H8H0 719 aaKnown RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 PIH1D3Q9NQM4 214 aaKnown RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 ANKEF1Q9NU02 776 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 CLIC5Q9NZA1 410 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 GDE1Q9NZC3 331 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 TBC1D7Q9P0N9 293 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 CRNNQ9UBG3 495 aaPredicted RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 NOL7Q9UMY1 257 aaKnown RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 IKBKGQ9Y6K9 419 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 DHX29Q7Z478 1369 aaKnown RBP1.75□□□□□ -2.13
NUP54-208ENST00000508604 SMARCA2P51531 1590 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 PRDM2Q13029 1718 aa1.75□□□□□ -2.13
NUP54-208ENST00000508604 SPATA31D1Q6ZQQ2 1576 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 KANK1Q14678 1352 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 EPOPA6NHQ4 379 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TMEM110-MUSTN1A8MSY1 372 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms