RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CDNFQ49AH0 187 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 AARDQ4LEZ3 155 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 PDSS1Q5T2R2 415 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 TNFAIP8L2Q6P589 184 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ENPP7Q6UWV6 458 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 KBTBD6Q86V97 674 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ZFP82Q8N141 532 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 OR2T33Q8NG76 320 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 OR7G3Q8NG95 312 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 JOSD2Q8TAC2 188 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 TSPAN10Q9H1Z9 355 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 SMCO4Q9NRQ5 59 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC22A11Q9NSA0 550 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 CCL15-CCL14A0A0B4J2E2 113 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 GOT2P00505 430 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 VIPP01282 170 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 IFNGR1P15260 489 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 KLRC2P26717 231 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 AVPR1BP47901 424 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 GINS1Q14691 196 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 CCL15Q16663 113 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 CLEC12AQ5QGZ9 265 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 SIAH1Q8IUQ4 282 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 NPAS3Q8IXF0 933 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ANKRD53Q8N9V6 530 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 AVL9Q8NBF6 648 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 OR52E4Q8NGH9 312 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 VPS25Q9BRG1 176 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ATG5Q9H1Y0 275 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ABHD16BQ9H3Z7 469 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 IMP3Q9NV31 184 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 CDC14AQ9UNH5 594 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 NEXMIFQ5QGS0 1516 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 RPS10-NUDT3A0A1W2PQS6 291 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 NPIPA5E9PKD4 350 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ACOT7O00154 380 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 PPP1R2P9O14990 202 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 OR1F1O43749 312 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 TRAPPC2P0DI81 140 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 TRAPPC2BP0DI82 140 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 BPIP17213 487 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 RFC2P35250 354 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 RPS10P46783 165 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 NCBP2P52298 156 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 KCNC3Q14003 757 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 NFIXQ14938 502 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 PPA1Q15181 289 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 RTL6Q6ICC9 239 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 GTF2H5Q6ZYL4 71 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 PLPPR4Q7Z2D5 763 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 FAM83FQ8NEG4 500 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 OVCA2Q8WZ82 227 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ACTRT3Q9BYD9 372 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ABCG4Q9H172 646 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 SIRPGQ9P1W8 387 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 ACSL6Q9UKU0 697 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 NPIPA1Q9UND3 350 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 UBE2J1Q9Y385 318 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 PCDHGA5Q9Y5G8 931 aa10.85□□□□□ -0.67
LIMCH1-208ENST00000508501 A0A096LPI6 279 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC1A7O00341 560 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 VILLO15195 856 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ARPC5O15511 151 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 FMO6PO60774 539 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 EIF2B1Q14232 305 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 UPP1Q16831 310 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PRSS55Q6UWB4 352 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 BEND4Q6ZU67 534 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 GAREM2Q75VX8 874 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC9B2Q86UD5 537 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 NELL2Q99435 816 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 RBCK1Q9BYM8 510 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SLC25A31Q9H0C2 315 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 RAB9BQ9NP90 201 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 TMEM248Q9NWD8 314 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PCDHB14Q9Y5E9 798 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 NPIPA7E9PJI5 369 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 INSIG1O15503 277 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 GPR137BO60478 399 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 RPP14O95059 124 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 EPOP01588 193 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 LCKP06239 509 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 NPIPA8P0DM63 369 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 CD9P21926 228 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 ADORA2AP29274 412 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 SERPINA9Q86WD7 417 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 MINDY3Q9H8M7 445 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 DDX4Q9NQI0 724 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 POLE4Q9NR33 117 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 NRCAMQ92823 1304 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 IRS2Q9Y4H2 1338 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 A0A1W2PQ45 241 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 A0A1W2PQY0 241 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 A8MX80 341 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 TMEM150CB9EJG8 249 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 TNFRSF10AO00220 468 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 HEXBP07686 556 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PIRTP0C851 137 aa10.84□□□□□ -0.67
LIMCH1-208ENST00000508501 PPP3CBP16298 524 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 223.8 ms