RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 AP5B1Q2VPB7 878 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 CCDC153Q494R4 210 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 GGTA1PQ4G0N0 100 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 ZNF678Q5SXM1 525 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 AGAP7PQ5VUJ5 663 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 ATG14Q6ZNE5 492 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 RIPOR1Q6ZS17 1223 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 UBE3DQ7Z6J8 389 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 ARMC2Q8NEN0 867 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 WDR20Q8TBZ3 569 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 TM9SF4Q92544 642 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 RGMAQ96B86 450 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 IMMP1LQ96LU5 166 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 PTCHD1Q96NR3 888 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 AGAP4Q96P64 663 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 CDK15Q96Q40 435 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 MTERF1Q99551 399 aaKnown RBP16.33■□□□□ 0.2
MDC1-206ENST00000489540 DMRT3Q9NQL9 472 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 PRDM9Q9NQV7 894 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 TLN1Q9Y490 2541 aaKnown RBP16.32■□□□□ 0.2
MDC1-206ENST00000489540 FOXO6A8MYZ6 492 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 COPEO14579 308 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 SUPT7LO94864 414 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 PRR35P0CG20 571 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 ATP5A1P25705 553 aaKnown RBP16.32■□□□□ 0.2
MDC1-206ENST00000489540 CDH13P55290 713 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 CLCQ05315 142 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 SLC18A2Q05940 514 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 ACTN3Q08043 901 aaPredicted RBP16.32■□□□□ 0.2
MDC1-206ENST00000489540 TRAF3Q13114 568 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 CUL3Q13618 768 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 UNC50Q53HI1 259 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 FRG2Q64ET8 278 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 TTC19Q6DKK2 380 aaPredicted RBP16.32■□□□□ 0.2
MDC1-206ENST00000489540 OR4C11Q6IEV9 310 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 LANCL3Q6ZV70 420 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 ACOT4Q8N9L9 421 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 MYRIPQ8NFW9 859 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 FRG2BQ96QU4 278 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 OR51B5Q9H339 312 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 LYRM4Q9HD34 91 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 EMCNQ9ULC0 261 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 PPT2Q9UMR5 302 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 DAPP1Q9UN19 280 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 MRPS33Q9Y291 106 aaKnown RBP16.32■□□□□ 0.2
MDC1-206ENST00000489540 MMACHCQ9Y4U1 282 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 PCSK5Q92824 1860 aa16.32■□□□□ 0.2
MDC1-206ENST00000489540 FAM227AF5H4B4 570 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 SH3BGRLO75368 114 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 SCELO95171 688 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 MLYCDO95822 493 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 MYL2P10916 166 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 HIST1H1TP22492 207 aaPredicted RBP16.31■□□□□ 0.2
MDC1-206ENST00000489540 CERS1P27544 350 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 CASRP41180 1078 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 NEK2P51955 445 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 RAP1GDS1P52306 607 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 LIM2P55344 173 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 OR4D2P58180 307 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 NAA20P61599 178 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 RPS13P62277 151 aaKnown RBP16.31■□□□□ 0.2
MDC1-206ENST00000489540 BTG2P78543 158 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 IFT88Q13099 833 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 JMJD6Q6NYC1 403 aaPredicted RBP16.31■□□□□ 0.2
MDC1-206ENST00000489540 IGFL3Q6UXB1 125 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 ZYG11AQ6WRX3 759 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 PRICKLE2Q7Z3G6 844 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 ZNF595Q8IYB9 648 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 OR4F6Q8NGB9 312 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 TRPC4APQ8TEL6 797 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 L3HYPDHQ96EM0 354 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 LMF1Q96S06 567 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 LPAR4Q99677 370 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 TMEM109Q9BVC6 243 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 LGALS13Q9UHV8 139 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 STK38LQ9Y2H1 464 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 SPACA6W5XKT8 324 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 CCDC88CQ9P219 2028 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 MED13Q9UHV7 2174 aa16.31■□□□□ 0.2
MDC1-206ENST00000489540 SYNDIG1LA6NDD5 238 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 SAP18O00422 153 aaKnown RBP16.3■□□□□ 0.2
MDC1-206ENST00000489540 SLC28A2O43868 658 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 PLIN3O60664 434 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 PROCP04070 461 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 SSR2P43308 183 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 HSD17B7P56937 341 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 EXT1Q16394 746 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 SFT2D3Q587I9 215 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 PLAG1Q6DJT9 500 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 ZNF793Q6ZN11 406 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 RPS27LQ71UM5 84 aaKnown RBP16.3■□□□□ 0.2
MDC1-206ENST00000489540 RNF175Q8N4F7 328 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 ZADH2Q8N4Q0 377 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 RDH11Q8TC12 318 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 TSLPQ969D9 159 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 TMEM237Q96Q45 408 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 SERPINI1Q99574 410 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 WDR77Q9BQA1 342 aaPredicted RBP16.3■□□□□ 0.2
MDC1-206ENST00000489540 ELOVL6Q9H5J4 265 aa16.3■□□□□ 0.2
MDC1-206ENST00000489540 KCMF1Q9P0J7 381 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms