RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 PCDH1Q08174 1060 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 DOC2AQ14183 400 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 E2F2Q14209 437 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 VPS26BQ4G0F5 336 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 XKR6Q5GH73 641 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 ZC3H12BQ5HYM0 836 aaKnown RBP18.43■□□□□ 0.54
CCM2-216ENST00000488727 LETMD1Q6P1Q0 360 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 CDYL2Q8N8U2 506 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 SPDL1Q96EA4 605 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 WDR34Q96EX3 536 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 PKP2Q99959 881 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 PCDHAC1Q9H158 963 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 EHD1Q9H4M9 534 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 COPS7BQ9H9Q2 264 aaPredicted RBP18.43■□□□□ 0.54
CCM2-216ENST00000488727 CNOT11Q9UKZ1 510 aaKnown RBP18.43■□□□□ 0.54
CCM2-216ENST00000488727 B3GALT1Q9Y5Z6 326 aa18.43■□□□□ 0.54
CCM2-216ENST00000488727 TRABD2BA6NFA1 517 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 EIF4E1BA6NMX2 242 aaKnown RBP18.42■□□□□ 0.54
CCM2-216ENST00000488727 POLR1CO15160 346 aaPredicted RBP18.42■□□□□ 0.54
CCM2-216ENST00000488727 EEDO75530 441 aaKnown RBP18.42■□□□□ 0.54
CCM2-216ENST00000488727 BCL6P41182 706 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 PIK3CGP48736 1102 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 NME5P56597 212 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 IRF8Q02556 426 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 TRAF3Q13114 568 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 MED21Q13503 144 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 RTP5Q14D33 572 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 C6orf136Q5SQH8 315 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 OR52E8Q6IFG1 317 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 GOLM1Q8NBJ4 401 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 SARGQ9BW04 601 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 RARRES3Q9UL19 164 aa18.42■□□□□ 0.54
CCM2-216ENST00000488727 ASPMQ8IZT6 3477 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 DYTNA2CJ06 578 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 C9orf172C9J069 976 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 NME4O00746 187 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 KATNA1O75449 491 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 TIAF1O95411 115 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 STAMBPO95630 424 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 FGF5P12034 268 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 SLC7A1P30825 629 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 KCNK10P57789 538 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 SHC2P98077 582 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 BNIP2Q12982 314 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 SLBPQ14493 270 aaKnown RBP eCLIP18.41■□□□□ 0.54
CCM2-216ENST00000488727 IL11RAQ14626 422 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 ATP6AP1LQ52LC2 224 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 PRAMEF17Q5VTA0 474 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 Q6ZSR9 355 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 ERMP1Q7Z2K6 904 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 ANKRD53Q8N9V6 530 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 USP7Q93009 1102 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 RNF31Q96EP0 1072 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 ZNF285Q96NJ3 590 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 SLC46A1Q96NT5 459 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 CDK15Q96Q40 435 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 TAAR9Q96RI9 348 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 AIF1LQ9BQI0 150 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 SPRTNQ9H040 489 aaPredicted RBP18.41■□□□□ 0.54
CCM2-216ENST00000488727 RAB26Q9ULW5 256 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 AP4S1Q9Y587 144 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 PCDHGA4Q9Y5G9 962 aa18.41■□□□□ 0.54
CCM2-216ENST00000488727 TRBC2A0A5B9 178 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 FAM234BA2RU67 622 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 H0YGG7 62 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 DENRO43583 198 aaKnown RBP18.4■□□□□ 0.54
CCM2-216ENST00000488727 SLC22A3O75751 556 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 CAPN1P07384 714 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 LINGO3P0C6S8 592 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 GRK3P35626 688 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 CASP2P42575 452 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 VSX2P58304 361 aaPredicted RBP18.4■□□□□ 0.54
CCM2-216ENST00000488727 RAB15P59190 212 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 ARF3P61204 181 aaPredicted RBP18.4■□□□□ 0.54
CCM2-216ENST00000488727 RPS15AP62244 130 aaKnown RBP18.4■□□□□ 0.54
CCM2-216ENST00000488727 COL9A2Q14055 689 aaPredicted RBP18.4■□□□□ 0.54
CCM2-216ENST00000488727 IL23RQ5VWK5 629 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 VN1R4Q7Z5H5 301 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 PPP1R3BQ86XI6 285 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 SLC15A3Q8IY34 581 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 OR4F6Q8NGB9 312 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 METTL6Q8TCB7 284 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 ATP6V1E2Q96A05 226 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 LRRC58Q96CX6 371 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 SLC39A3Q9BRY0 314 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 DDA1Q9BW61 102 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 TRIM15Q9C019 465 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 MUC13Q9H3R2 512 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 FANCEQ9HB96 536 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 ASCL3Q9NQ33 180 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 STARD5Q9NSY2 213 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 FOXJ2Q9P0K8 574 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 LEF1Q9UJU2 399 aaPredicted RBP18.4■□□□□ 0.54
CCM2-216ENST00000488727 FREM2Q5SZK8 3169 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 KCNE1BA0A087WTH5 132 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 AQP12BA6NM10 295 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 H0YJX3 145 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 OR1F1O43749 312 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 STATHP02808 62 aa18.4■□□□□ 0.54
CCM2-216ENST00000488727 SLC6A2P23975 617 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms