RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 OR2M4Q96R27 311 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 C17orf62Q9BQA9 187 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 BCL7BQ9BQE9 202 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 NECTIN3Q9NQS3 549 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 PEX12O00623 359 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 MID1O15344 667 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 PLOD3O60568 738 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 BCHEP06276 602 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 C8orf89P0DMQ9 161 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 HSD17B1P14061 328 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 PRDX3P30048 256 aaKnown RBP10.61□□□□□ -0.71
HDAC6-228ENST00000486227 SUOXP51687 545 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 SGSHP51688 502 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 ERVFC1P60507 584 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 TOR1AIP1Q5JTV8 583 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 MLIPQ5VWP3 458 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 LETMD1Q6P1Q0 360 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 CBARPQ8N350 705 aaPredicted RBP10.61□□□□□ -0.71
HDAC6-228ENST00000486227 Q8N9G6 341 aaPredicted RBP10.61□□□□□ -0.71
HDAC6-228ENST00000486227 OR10G2Q8NGC3 310 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 NFKBIDQ8NI38 313 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 C9orf43Q8TAL5 461 aaPredicted RBP10.61□□□□□ -0.71
HDAC6-228ENST00000486227 CHPT1Q8WUD6 406 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 PKP4Q99569 1192 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 WDR83Q9BRX9 315 aaKnown RBP10.61□□□□□ -0.71
HDAC6-228ENST00000486227 STRADBQ9C0K7 418 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 C11orf16Q9NQ32 467 aa10.61□□□□□ -0.71
HDAC6-228ENST00000486227 STX11O75558 287 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ADRB3P13945 408 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 JUPP14923 745 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 SDC2P34741 201 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 PGDP52209 483 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 KCNAB2Q13303 367 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 LAPTM4AQ15012 233 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 CST6Q15828 149 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 OTUD1Q5VV17 481 aaPredicted RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 KANK2Q63ZY3 851 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ALKBH2Q6NS38 261 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ZC3H14Q6PJT7 736 aaKnown RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 GAREM2Q75VX8 874 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 CARM1Q86X55 608 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 SUN3Q8TAQ9 357 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 FGF13Q92913 245 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 PYURFQ96I23 114 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 MYRFLQ96LU7 910 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 KCNS3Q9BQ31 491 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 LMAN1LQ9HAT1 526 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 SERTAD3Q9UJW9 196 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 TRBC2A0A5B9 178 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 VEGFDO43915 354 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 GMFGO60234 142 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 MPZL2O60487 215 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 LILRB3O75022 631 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 C5AR1P21730 350 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 OPRL1P41146 370 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 OC90Q02509 493 aaPredicted RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 NFE2L1Q14494 772 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ABHD13Q7L211 337 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 TMC8Q8IU68 726 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 METTL25Q8N6Q8 603 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 KIAA1143Q96AT1 154 aaPredicted RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ARMC5Q96C12 935 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 TPSD1Q9BZJ3 242 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 PRDM8Q9NQV8 689 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 STON1Q9Y6Q2 735 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 F5P12259 2224 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 CENPBD1B2RD01 187 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 SEMA3DO95025 777 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ATE1O95260 518 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 SLC16A8O95907 504 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 PPP5CP53041 499 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 TARDBPQ13148 414 aaKnown RBP eCLIP10.6□□□□□ -0.715e-7■■■■■ 33.1
HDAC6-228ENST00000486227 LGI4Q8N135 537 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 PPP1R14AQ96A00 147 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 RC3H2Q9HBD1 1191 aaKnown RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 POLE4Q9NR33 117 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 HSFX1Q9UBD0 423 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 LHX3Q9UBR4 397 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 CLCA3PQ9Y6N3 262 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 MAP1BP46821 2468 aaKnown RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 FAM86C2PA6NEL3 165 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 OR5K4A6NMS3 321 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ACOX3O15254 700 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ORC5O43913 435 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ANXA8P13928 327 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 TYRP1P17643 537 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 DNAJA1P31689 397 aaKnown RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 CASRP41180 1078 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 HNRNPFP52597 415 aaKnown RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 CCINQ13939 588 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 GRIN2CQ14957 1233 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 PRRT3Q5FWE3 981 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 TCEAL5Q5H9L2 206 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 TMEM236Q5W0B7 351 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 FAM92BQ6ZTR7 304 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 HSD11B1LQ7Z5J1 315 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 FGD2Q7Z6J4 655 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 FAM98AQ8NCA5 519 aaKnown RBP10.6□□□□□ -0.71
HDAC6-228ENST00000486227 ZNF671Q8TAW3 534 aa10.6□□□□□ -0.71
HDAC6-228ENST00000486227 C1GALT1C1Q96EU7 318 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms