RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 R4GN57 208 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 ROBO1Q9Y6N7 1651 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CAMTA1Q9Y6Y1 1673 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 OVOS2A0A0G2JMS6 1433 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CEMIPQ8WUJ3 1361 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CDHR2Q9BYE9 1310 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 C2CD4DB7Z1M9 353 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 H0YAE9 185 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 SNX3O60493 162 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 ATP5HO75947 161 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 MOCS3O95396 460 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 FERP16591 822 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CYP2A7P20853 494 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CD27P26842 260 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 GNGT1P63211 74 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CSNK2BP67870 215 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 MYL7Q01449 175 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 TRAP1Q12931 704 aaKnown RBP5.08□□□□□ -1.6
USP40-213ENST00000483216 EXT1Q16394 746 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 ZNF74Q16587 644 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CCDC152Q4G0S7 254 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 LYSMD4Q5XG99 296 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 KDM7AQ6ZMT4 941 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 Q6ZRP5 223 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 C11orf57Q6ZUT1 292 aaPredicted RBP5.08□□□□□ -1.6
USP40-213ENST00000483216 STXBP4Q6ZWJ1 553 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 CD302Q8IX05 232 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 ZNF440Q8IYI8 595 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 LINC00301Q8NCQ3 95 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 MAPK15Q8TD08 544 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 SLCO2A1Q92959 643 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 TBC1D31Q96DN5 1066 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 NECTIN4Q96NY8 510 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 USP28Q96RU2 1077 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 SERINC2Q96SA4 455 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 LPAR4Q99677 370 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 PIGQQ9BRB3 760 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 SLC25A23Q9BV35 468 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 TRIM15Q9C019 465 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 ZCCHC17Q9NP64 241 aaKnown RBP5.08□□□□□ -1.6
USP40-213ENST00000483216 CHCHD3Q9NX63 227 aaKnown RBP5.08□□□□□ -1.6
USP40-213ENST00000483216 RGPD2P0DJD1 1756 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 KDM3BQ7LBC6 1761 aa5.08□□□□□ -1.6
USP40-213ENST00000483216 TRBV5-5A0A0J9YX44 114 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 PDLIM1O00151 329 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 FGFR1OPO95684 399 aaKnown RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 TBX6O95947 436 aaPredicted RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 ZFYP08048 801 aaPredicted RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 GSTA2P09210 222 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 ERCC2P18074 760 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 AZGP1P25311 298 aaKnown RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 NT5C2P49902 561 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 HUNKP57058 714 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 DLK1P80370 383 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 GUCY2DQ02846 1103 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 EFTUD2Q15029 972 aaKnown RBP eCLIP5.07□□□□□ -1.6
USP40-213ENST00000483216 SPA17Q15506 151 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 ZNF530Q6P9A1 599 aaPredicted RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 METTL7BQ6UX53 244 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 MMGT1Q8N4V1 131 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 MREGQ8N565 214 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 OR7A2PQ8NGA2 310 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 OR6S1Q8NH40 331 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 SNRNP27Q8WVK2 155 aaKnown RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 DYDC1Q8WWB3 177 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 KCNE4Q8WWG9 221 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 EXT2Q93063 718 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 NSMCE3Q96MG7 304 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 ZNF558Q96NG5 402 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 AGAP3Q96P47 875 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 GSDMAQ96QA5 445 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 RAB3IPQ96QF0 476 aaPredicted RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 ANKRD2Q9GZV1 360 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 VCX3BQ9H321 246 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 VCX3AQ9NNX9 186 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 LCMT1Q9UIC8 334 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 HPCAL4Q9UM19 191 aa5.07□□□□□ -1.6
USP40-213ENST00000483216 RPL26L1Q9UNX3 145 aaKnown RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 AHDC1Q5TGY3 1603 aaPredicted RBP5.07□□□□□ -1.6
USP40-213ENST00000483216 ALS2Q96Q42 1657 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 LRRD1A4D1F6 860 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 H3BQF6 201 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 FPGTO14772 594 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 TEX28O15482 410 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 MAGEC1O60732 1142 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 DUS4LO95620 317 aaKnown RBP5.06□□□□□ -1.6
USP40-213ENST00000483216 VIMP08670 466 aaKnown RBP5.06□□□□□ -1.6
USP40-213ENST00000483216 TRIM49P0CI25 452 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 TRIM49CP0CI26 452 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 ATP5DP30049 168 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 MMP12P39900 470 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 OPRL1P41146 370 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 PSMD7P51665 324 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 ZNF131P52739 623 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 RAD23AP54725 363 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 XRCC4Q13426 336 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 CUL1Q13616 776 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 KCTD2Q14681 263 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 COG2Q14746 738 aa5.06□□□□□ -1.6
USP40-213ENST00000483216 GPR33Q49SQ1 333 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms