RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 BTNL2Q9UIR0 455 aa13.73□□□□□ -0.21
COL4A6-206ENST00000477085 ATG4BQ9Y4P1 393 aa13.73□□□□□ -0.21
COL4A6-206ENST00000477085 IGHV1OR21-1A0A087WYE8 117 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 IGHV5-51A0A0C4DH38 117 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 LY6G6EA0A0G2JKS1 128 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 A0A1W2PR48 441 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 RNASET2O00584 256 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 CPSF4O95639 269 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 C9P02748 559 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 CDH3P22223 829 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 CNR2P34972 360 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 TRPC1P48995 793 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 ARFIP1P53367 373 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 EEFSECP57772 596 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 OR4D2P58180 307 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 STXBP1P61764 594 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 TRAP1Q12931 704 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 RCN1Q15293 331 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 ANGPT1Q15389 498 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 DEFB110Q30KQ9 67 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 TRIM40Q6P9F5 258 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 KLHL35Q6PF15 583 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 R3HCC1LQ7Z5L2 792 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 ZCCHC7Q8N3Z6 543 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 ARHGEF39Q8N4T4 335 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 DNAJC22Q8N4W6 341 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 C19orf47Q8N9M1 422 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 FAM47BQ8NA70 645 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 SLC26A7Q8TE54 656 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 NCSTNQ92542 709 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 MTERF3Q96E29 417 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 TGM7Q96PF1 710 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 PRPF18Q99633 342 aaKnown RBP13.72□□□□□ -0.21
COL4A6-206ENST00000477085 STARD5Q9NSY2 213 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 MAPRE3Q9UPY8 281 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 U3KQA8 63 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 CACNA1EQ15878 2313 aa13.72□□□□□ -0.21
COL4A6-206ENST00000477085 C15orf38-AP3S2A0A0A6YYH1 394 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 C1orf226A1L170 272 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 H3BNX3 289 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 PGRMC2O15173 223 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 SCELO95171 688 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 EIF2S1P05198 315 aaKnown RBP13.71□□□□□ -0.21
COL4A6-206ENST00000477085 GLB1P16278 677 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 ATP6V1B2P21281 511 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 EPHA4P54764 986 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 TRA2BP62995 288 aaKnown RBP13.71□□□□□ -0.21
COL4A6-206ENST00000477085 HBA1P69905 142 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 RGS1Q08116 209 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 NR1D2Q14995 579 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 FXNQ16595 210 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 NDUFAF5Q5TEU4 345 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 C18orf63Q68DL7 685 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 CYP2R1Q6VVX0 501 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 ZNF621Q6ZSS3 439 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 PRSS41Q7RTY9 318 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 ARPINQ7Z6K5 226 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 DNAJB8Q8NHS0 232 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 KLHL6Q8WZ60 621 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 GAL3ST3Q96A11 431 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 PHF12Q96QT6 1004 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 THUMPD3Q9BV44 507 aaKnown RBP13.71□□□□□ -0.21
COL4A6-206ENST00000477085 RAB33BQ9H082 229 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 GAREM1Q9H706 876 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 KAT8Q9H7Z6 458 aaKnown RBP13.71□□□□□ -0.21
COL4A6-206ENST00000477085 DCLRE1BQ9H816 532 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 S100A14Q9HCY8 104 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 C1GALT1Q9NS00 363 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 NLGN3Q9NZ94 848 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 TMEM9Q9P0T7 183 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 WBP11Q9Y2W2 641 aaKnown RBP13.71□□□□□ -0.21
COL4A6-206ENST00000477085 WDR87Q6ZQQ6 2873 aa13.71□□□□□ -0.21
COL4A6-206ENST00000477085 TTC28Q96AY4 2481 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 GLOD5A6NK44 160 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 TBX19O60806 448 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 C6orf47O95873 294 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 SLC35G6P0C7Q6 338 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 NCK1P16333 377 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 CD1CP29017 333 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 GABRA4P48169 554 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 ALDH9A1P49189 494 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 VSX2P58304 361 aaPredicted RBP13.71□□□□□ -0.22
COL4A6-206ENST00000477085 GAB1Q13480 694 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 SLC9A5Q14940 896 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 HEPACAMQ14CZ8 416 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 CCDC6Q16204 474 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 SPATS1Q496A3 300 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 ANXA8L1Q5VT79 327 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 TMEM214Q6NUQ4 689 aaKnown RBP13.71□□□□□ -0.22
COL4A6-206ENST00000477085 GPR155Q7Z3F1 870 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 CALHM3Q86XJ0 350 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 PTRH1Q86Y79 214 aaKnown RBP13.71□□□□□ -0.22
COL4A6-206ENST00000477085 Q8N9G6 341 aaPredicted RBP13.71□□□□□ -0.22
COL4A6-206ENST00000477085 CAMKVQ8NCB2 501 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 OR10A6Q8NH74 314 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 GOT1L1Q8NHS2 421 aaPredicted RBP13.71□□□□□ -0.22
COL4A6-206ENST00000477085 ZCCHC10Q8TBK6 192 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 GBP5Q96PP8 586 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 MAPKAP1Q9BPZ7 522 aa13.71□□□□□ -0.22
COL4A6-206ENST00000477085 KCTD14Q9BQ13 255 aaPredicted RBP13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms