RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 Q8NA96 180 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 CLEC18CQ8NCF0 446 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 BBOF1Q8ND07 529 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 OR11G2Q8NGC1 345 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 ATL1Q8WXF7 558 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 WDR83Q9BRX9 315 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 HAUS8Q9BT25 410 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 FAM129AQ9BZQ8 928 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 TRIM31Q9BZY9 425 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 TGIF2Q9GZN2 237 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 LHPPQ9H008 270 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 ATG10Q9H0Y0 220 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 EPS8L2Q9H6S3 715 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 SYNPO2LQ9H987 977 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 PLAC1Q9HBJ0 212 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 MKKSQ9NPJ1 570 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 ARL15Q9NXU5 204 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC17A6Q9P2U8 582 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 PYCARDQ9ULZ3 195 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 VWA7Q9Y334 891 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 PTPN13Q12923 2485 aa6.44□□□□□ -1.38
CCDC88A-213ENST00000476903 FLNCQ14315 2725 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 ZGRF1Q86YA3 2104 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 NSG1A0A0A6YYJ2 146 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 IDSB3KWA1 339 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 E7ESA3 106 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 H0YIG0 161 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 GPR42O15529 346 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 FOXS1O43638 330 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 TSPAN12O95859 305 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 HEXBP07686 556 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 CYC1P08574 325 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 ENO2P09104 434 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 CDH1P12830 882 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 CXCR2P25025 360 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 RPL21P46778 160 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 UQCRFS1P47985 274 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 AP2B1P63010 937 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 CSNK1G2P78368 415 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 MGAT5Q09328 741 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 ILF2Q12905 390 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 PDIA2Q13087 525 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 CALCOCO2Q13137 446 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 NAE1Q13564 534 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 PRR30Q53SZ7 412 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 FHL5Q5TD97 284 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 ATG9BQ674R7 924 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 DUPD1Q68J44 220 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 NDUFAF7Q7L592 441 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 NLRC3Q7RTR2 1065 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 STRA8Q7Z7C7 330 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 ZC3HC1Q86WB0 502 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 PLD3Q8IV08 490 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 KBTBD2Q8IY47 623 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 TBC1D19Q8N5T2 526 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 CAMKVQ8NCB2 501 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 FBXO36Q8NEA4 188 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 OR56A3Q8NH54 315 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 PPP4R1Q8TF05 950 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 DVL3Q92997 716 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 C8orf44Q96CB5 159 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 FBXL8Q96CD0 374 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 SNRNP40Q96DI7 357 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 THOC3Q96J01 351 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 KRT12Q99456 494 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 OLFM1Q99784 485 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 WDR77Q9BQA1 342 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 ZNF160Q9HCG1 818 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 NSMCE4AQ9NXX6 385 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 SH2B3Q9UQQ2 575 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 SNX24Q9Y343 169 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 SVILO95425 2214 aa6.43□□□□□ -1.38
CCDC88A-213ENST00000476903 HIVEP3Q5T1R4 2406 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 LOC102723996A0A087X1L8 192 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 IGHV1-45A0A0A0MS14 117 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 A0A1W2PQ72 361 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 FEZF1A0PJY2 475 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 TCP11X1B4DZS4 312 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CYR61O00622 381 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 TP73O15350 636 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 BMP10O95393 424 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 NSA2O95478 260 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 GUCA1CO95843 209 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 STATHP02808 62 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC35G6P0C7Q6 338 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 GLI4P10075 376 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 COX6A1P12074 109 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 NPPBP16860 134 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 ZNF37AP17032 561 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 SAT1P21673 171 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CASQ1P31415 396 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 BCL6P41182 706 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 GLRBP48167 497 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CCR8P51685 355 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 CORO7P57737 925 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MAT1AQ00266 395 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 SRSF1Q07955 248 aaKnown RBP eCLIP6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 Q0VFX4 171 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 MFAP5Q13361 173 aa6.42□□□□□ -1.38
CCDC88A-213ENST00000476903 FASTKD3Q14CZ7 662 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms