RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 GPC6Q9Y625 555 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 LOC285556D6RIA3 1793 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ACACAQ13085 2346 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PRR23D1E9PI22 279 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 DOK2O60496 412 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CSN2P05814 226 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 GYPBP06028 91 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 C8BP07358 591 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CLEC2LP0C7M8 214 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PRR23D2P0DMB1 279 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 BMP2P12643 396 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PORP16435 677 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CRHBPP24387 322 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 KDELR2P33947 212 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CD97P48960 835 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 HCAR3P49019 387 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 HLCSP50747 726 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 AIF1P55008 147 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 DNAJB13P59910 316 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CSTF1Q05048 431 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SCAPQ12770 1279 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 HNRNPA0Q13151 305 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SLC14A2Q15849 920 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ZNF791Q3KP31 576 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 IDNKQ5T6J7 187 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 INTS11Q5TA45 600 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PLEKHM3Q6ZWE6 761 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 TMPRSS9Q7Z410 1059 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CCDC116Q8IYX3 515 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PELI3Q8N2H9 469 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ATP6V1C2Q8NEY4 427 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 HUS1BQ8NHY5 278 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 IRGQQ8WZA9 623 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PMEPA1Q969W9 287 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 C11orf24Q96F05 449 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 NARS2Q96I59 477 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 FOXN4Q96NZ1 517 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 TSGA13Q96PP4 275 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 RAD9AQ99638 391 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SLC6A17Q9H1V8 727 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SUV39H2Q9H5I1 410 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SLC25A37Q9NYZ2 338 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 MYEF2Q9P2K5 600 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 NUFIP1Q9UHK0 495 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SNX11Q9Y5W9 270 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 MGAQ8IWI9 3026 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 FAM240BA0A1B0GVZ2 78 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 OR52A4PA6NMU1 304 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ARHGEF9O43307 516 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PRMT3O60678 531 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ADAM23O75077 832 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PRSS23O95084 383 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 OR5F1O95221 314 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 NUDT14O95848 222 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 IL3P08700 152 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SAGP10523 405 aaPredicted RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CELP19835 753 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 OGNP20774 298 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 MYF6P23409 242 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 MAPK1P28482 360 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CNR2P34972 360 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 LIPAP38571 399 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 GSTM5P46439 218 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CCT3P49368 545 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CLCNKAP51800 687 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 EEFSECP57772 596 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 TAS2R41P59536 307 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SLC3A1Q07837 685 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 C1DQ13901 141 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ZMAT1Q5H9K5 638 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SNX20Q7Z614 316 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ZZZ3Q8IYH5 903 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 NXPE1Q8N323 547 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CADM2Q8N3J6 435 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 MINDY1Q8N5J2 469 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ANKFN1Q8N957 763 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CYB561A3Q8NBI2 242 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 SLC43A3Q8NBI5 491 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 NAXEQ8NCW5 288 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 DNASE1L2Q92874 299 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CLP1Q92989 425 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CSF3RQ99062 836 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 NIPSNAP1Q9BPW8 284 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 BRINP2Q9C0B6 783 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 POLR2J3Q9H1A7 115 aaKnown RBP4.79□□□□□ -1.64
CCDC39-204ENST00000476379 ASAH2Q9NR71 780 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 KCTD5Q9NXV2 234 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CD300AQ9UGN4 299 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 CLEC2DQ9UHP7 191 aa4.79□□□□□ -1.64
CCDC39-204ENST00000476379 PRAMEF33A0A0G2JMD5 474 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 A0A1W2PRB8 838 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 FADS2P1A8MWK0 482 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TARM1B6A8C7 271 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 MAGEB4O15481 346 aaPredicted RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 ALPLP05186 524 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 OR12D1P0DN82 309 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 GGT1P19440 569 aa4.78□□□□□ -1.64
CCDC39-204ENST00000476379 PAICSP22234 425 aaKnown RBP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 LSM11P83369 360 aaKnown RBP eCLIP4.78□□□□□ -1.64
CCDC39-204ENST00000476379 TXNL4AP83876 142 aaKnown RBP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms