RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 AKAP17AQ02040 695 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 FCHO2Q0JRZ9 810 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CETN1Q12798 172 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 ABRQ12979 859 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 TRA2AQ13595 282 aaKnown RBP eCLIP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CAPRIN1Q14444 709 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 TMEM132DQ14C87 1099 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC39A12Q504Y0 691 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 PM20D1Q6GTS8 502 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CDHR3Q6ZTQ4 885 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 KCTD9Q7L273 389 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 ZER1Q7Z7L7 766 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 SIAH3Q8IW03 269 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 TDHQ8IZJ6 230 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CARNMT1Q8N4J0 409 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 C10orf53Q8N6V4 93 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 MSANTD4Q8NCY6 345 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 C11orf45Q8TAV5 145 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 NPRL2Q8WTW4 380 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CDKN2AIPNLQ96HQ2 116 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 LINC00167Q96N53 147 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 NEDD4LQ96PU5 975 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 RASL10BQ96S79 203 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 PRMT1Q99873 361 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 C17orf62Q9BQA9 187 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC5A7Q9GZV3 580 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 MRPL17Q9NRX2 175 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 PDRG1Q9NUG6 133 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 TBC1D13Q9NVG8 400 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 MTRRQ9UBK8 725 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC12A6Q9UHW9 1150 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 FBXL4Q9UKA2 621 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 PILRBQ9UKJ0 227 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 ELF5Q9UKW6 265 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 PFASO15067 1338 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 C13orf42A0A1B0GVH6 325 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 A0A1W2PR80 420 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 A0A1W2PRV1 198 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 A8MVM7 634 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 A8MXK9 166 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 PGRMC2O15173 223 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 KINO60870 393 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ATP9AO75110 1047 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 SAP30O75446 220 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 RAD51DO75771 328 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 AKAP3O75969 853 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 MELTFP08582 738 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 VCLP18206 1134 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 CTNNB1P35222 781 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 SOX3P41225 446 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 OR3A2P47893 321 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 KHKP50053 298 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 XGP55808 180 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 DCDC1P59894 354 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 FKBP1BP68106 108 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ARHGAP1Q07960 439 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 SRSF9Q13242 221 aaKnown RBP eCLIP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 SGCGQ13326 291 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 EFTUD2Q15029 972 aaKnown RBP eCLIP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 DUSP5Q16690 384 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 FUT11Q495W5 492 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 LRRC38Q5VT99 294 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 OLFML2AQ68BL7 652 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 DHRS11Q6UWP2 260 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 FCRLAQ7L513 359 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 COX8CQ7Z4L0 72 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ADCK1Q86TW2 530 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ZC3H3Q8IXZ2 948 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 KLHDC8AQ8IYD2 350 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 NAT8LQ8N9F0 302 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 OR5T2Q8NGG2 359 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 TYMSOSQ8TAI1 123 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ATP8B4Q8TF62 1192 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 GATAD1Q8WUU5 269 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 KRT35Q92764 455 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 AP2M1Q96CW1 435 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF486Q96H40 463 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 PANX3Q96QZ0 392 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF559Q9BR84 538 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 IDI2Q9BXS1 227 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ACPTQ9BZG2 426 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 NACAP1Q9BZK3 213 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 CUEDC2Q9H467 287 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 RPF1Q9H9Y2 349 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 TMOD3Q9NYL9 352 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 HACD3Q9P035 362 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF107Q9UII5 783 aaPredicted RBP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 POMT2Q9UKY4 750 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 NCKAP1Q9Y2A7 1128 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 KIF25-AS1Q9Y6Z4 181 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 COLEC10Q9Y6Z7 277 aa2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 MYH14Q7Z406 1995 aaKnown RBP2.47□□□□□ -2.01
CCDC88A-212ENST00000474059 MAGEB16A2A368 324 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 RTCAO00442 366 aaKnown RBP2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 MLNRO43193 412 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 SCO2O43819 266 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 CYTIPO60759 359 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 RTN2O75298 545 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 HPP00738 406 aa2.46□□□□□ -2.02
CCDC88A-212ENST00000474059 MT-ND2P03891 347 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms