RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 TRIM49D1C9J1S8 452 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 SNRPAP09012 282 aaKnown RBP21.58■■□□□ 1.05
PTPN4-208ENST00000460289 PCNAP12004 261 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 MAOAP21397 527 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 UQCRFS1P47985 274 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 TNFSF10P50591 281 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 HSD17B7P56937 341 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 SLC26A5P58743 744 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 TECRLQ5HYJ1 363 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 CYP4X1Q8N118 509 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 FAM26EQ8N5C1 309 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 AMER2Q8N7J2 671 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 CMTM7Q96FZ5 175 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 BARD1Q99728 777 aaKnown RBP21.58■■□□□ 1.05
PTPN4-208ENST00000460289 TBCDQ9BTW9 1192 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP21.58■■□□□ 1.05
PTPN4-208ENST00000460289 ACTR8Q9H981 624 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 PRDM7Q9NQW5 492 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 FLNCQ14315 2725 aa21.58■■□□□ 1.05
PTPN4-208ENST00000460289 IGKV3D-11A0A0A0MRZ8 115 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 RIPK2O43353 540 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 UGDHO60701 494 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 WDPCPO95876 746 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 TAS2R50P59544 299 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 GTF2H2Q13888 395 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 ACER2Q5QJU3 275 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 GTF2H2CQ6P1K8 395 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 MYLK4Q86YV6 388 aaPredicted RBP21.57■■□□□ 1.04
PTPN4-208ENST00000460289 CNPY4Q8N129 248 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 SUN3Q8TAQ9 357 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 SCYL1Q96KG9 808 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 MS4A8Q9BY19 250 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 IPPKQ9H8X2 491 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 NECTIN3Q9NQS3 549 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 ZNF358Q9NW07 568 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 ABI3Q9P2A4 366 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 DAPP1Q9UN19 280 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 TSC22D4Q9Y3Q8 395 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 PCDHGA11Q9Y5H2 935 aa21.57■■□□□ 1.04
PTPN4-208ENST00000460289 FLNBO75369 2602 aaKnown RBP21.56■■□□□ 1.04
PTPN4-208ENST00000460289 CLEC18AA5D8T8 446 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 SYNDIG1LA6NDD5 238 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 SMIM24O75264 130 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 PIK3CBP42338 1070 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 LIM2P55344 173 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 MEP1AQ16819 746 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 ADGRD1Q6QNK2 874 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 CLEC18BQ6UXF7 455 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 ZNF595Q8IYB9 648 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 SLC5A8Q8N695 610 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 CLEC18CQ8NCF0 446 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 REPS1Q96D71 796 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 MTBPQ96DY7 904 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 PRTFDC1Q9NRG1 225 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 SCN2AQ99250 2005 aa21.56■■□□□ 1.04
PTPN4-208ENST00000460289 SHANK1Q9Y566 2161 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 ASH1LQ9NR48 2969 aaKnown RBP21.55■■□□□ 1.04
PTPN4-208ENST00000460289 OR5H15A6NDH6 313 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 STX16-NPEPL1H3BU86 382 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 STX16O14662 325 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 TGFB1P01137 390 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 CERS1P27544 350 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 PHEXP78562 749 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 SLC13A2Q13183 592 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 AP5B1Q2VPB7 878 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 DEPDC1Q5TB30 811 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 FHL5Q5TD97 284 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 GOLGA7Q7Z5G4 137 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 SCUBE1Q8IWY4 988 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 PTGR2Q8N8N7 351 aaPredicted RBP21.55■■□□□ 1.04
PTPN4-208ENST00000460289 EIF1ADQ8N9N8 165 aaKnown RBP21.55■■□□□ 1.04
PTPN4-208ENST00000460289 ELP5Q8TE02 316 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 MRPL57Q9BQC6 102 aaKnown RBP21.55■■□□□ 1.04
PTPN4-208ENST00000460289 CENPKQ9BS16 269 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 LYRM4Q9HD34 91 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 XPR1Q9UBH6 696 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 NTNG1Q9Y2I2 539 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 SPACA6W5XKT8 324 aa21.55■■□□□ 1.04
PTPN4-208ENST00000460289 RELNP78509 3460 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 LRRC14BA6NHZ5 514 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 SAGE2PA6NJ88 616 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 H0YIV9 168 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 E2F3O00716 465 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 CDK2AP1O14519 115 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 SIX3O95343 332 aaPredicted RBP21.54■■□□□ 1.04
PTPN4-208ENST00000460289 CBX6O95503 412 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 FAM153BP0C7A2 387 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 ELOAQ14241 798 aaKnown RBP21.54■■□□□ 1.04
PTPN4-208ENST00000460289 NR6A1Q15406 480 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 INAQ16352 499 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 FAM153CQ494X1 144 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 KHDRBS2Q5VWX1 349 aaKnown RBP21.54■■□□□ 1.04
PTPN4-208ENST00000460289 FAM180AQ6UWF9 173 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 TIFABQ6ZNK6 161 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 UBE3DQ7Z6J8 389 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 LGI4Q8N135 537 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 HUS1BQ8NHY5 278 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 GRHL3Q8TE85 626 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 ATP6V1E2Q96A05 226 aa21.54■■□□□ 1.04
PTPN4-208ENST00000460289 PHF21BQ96EK2 531 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms