RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TOR3AQ9H497 397 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 AIG1Q9NVV5 245 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 GLTPQ9NZD2 209 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 MALT1Q9UDY8 824 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 MSI1O43347 362 aaKnown RBP5.89□□□□□ -1.47
SCN1A-203ENST00000409050 SPARCP09486 303 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 ALPIP09923 528 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 NCK1P16333 377 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 HNRNPFP52597 415 aaKnown RBP5.89□□□□□ -1.47
SCN1A-203ENST00000409050 SIRPB2Q5JXA9 342 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 KDELC1Q6UW63 502 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 SLC51AQ86UW1 340 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 UMODL1-AS1Q8N2C9 162 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 OR10T2Q8NGX3 314 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 OR5J2Q8NH18 312 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 OR56A3Q8NH54 315 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 FOXRED1Q96CU9 486 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF285Q96NJ3 590 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 GAS2L1Q99501 681 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-203ENST00000409050 RGCCQ9H4X1 137 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 WDR45Q9Y484 360 aa5.89□□□□□ -1.47
SCN1A-203ENST00000409050 A0A0G2JLL6 359 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 UNC119BA6NIH7 251 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 EFCAB7A8K855 629 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 STBD1O95210 358 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 HLA-DQB2P05538 268 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DBIP07108 87 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 HBQ1P09105 142 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF280AP59817 542 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 BNIP3Q12983 259 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 LSAMPQ13449 338 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 VEZF1Q14119 521 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GRIK5Q16478 980 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 MS4A13Q5J8X5 152 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 METTL11BQ5VVY1 283 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SLC8B1Q6J4K2 584 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 KIAA1161Q6NSJ0 714 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 RFWD3Q6PCD5 774 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PGM2L1Q6PCE3 622 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 AGTRAPQ6RW13 159 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PRRT2Q7Z6L0 340 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 KREMEN2Q8NCW0 462 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 OR4F6Q8NGB9 312 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 OR4K14Q8NGD5 310 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 POC1BQ8TC44 478 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 BPIFB1Q8TDL5 484 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 THAP4Q8WY91 577 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 OR51I1Q9H343 314 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PELI2Q9HAT8 420 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 APOBEC3GQ9HC16 384 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 NPAP1Q9NZP6 1156 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 HES2Q9Y543 173 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PCDHB14Q9Y5E9 798 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 C9IYK1 514 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PLD2O14939 933 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 RDH16O75452 317 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 IFNA17P01571 189 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 FCER2P06734 321 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 CD3GP09693 182 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PGCP20142 388 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 RPS3P23396 243 aaKnown RBP eCLIP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DNASE1P24855 282 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 EIF2DP41214 584 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GJA9P57773 515 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ST3GAL4Q11206 333 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 GPR17Q13304 367 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PCLAFQ15004 111 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PTPRRQ15256 657 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 HMGN3Q15651 99 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 MINDY4Q4G0A6 757 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TOR1AIP1Q5JTV8 583 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 OR52E8Q6IFG1 317 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DUS1LQ6P1R4 473 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 NIPAL3Q6P499 406 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TNFAIP8L2Q6P589 184 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ARSKQ6UWY0 536 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TCTEX1D2Q8WW35 142 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 CLEC4DQ8WXI8 215 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SNAPC3Q92966 411 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 L3HYPDHQ96EM0 354 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SIGLEC10Q96LC7 697 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 ELAC1Q9H777 363 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 FAIMQ9NVQ4 179 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 SERTAD3Q9UJW9 196 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 HSPB11Q9Y547 144 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 NUBP2Q9Y5Y2 271 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DNMT3AQ9Y6K1 912 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 IQCMA0A1B0GVH7 501 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TCRBV7S2A1N4TA0A589 114 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TTC34A8MYJ7 566 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TSPAN6O43657 245 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 KLK3P07288 261 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 DLDP09622 509 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 JUPP14923 745 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 NELFEP18615 380 aaKnown RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 TIA1P31483 386 aaKnown RBP eCLIP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 MLLT3P42568 568 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-203ENST00000409050 CLDN8P56748 225 aa5.88□□□□□ -1.47
SCN1A-203ENST00000409050 PITRM1Q5JRX3 1037 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms